← 返回搜索
SASDVN2

S.aureus Protein Map Eap3 and Eap4 domains (Δ266-476)

数据类型：SASBDB 实验数据 状态：Published 曲线类型：SEC-SAS 最后更新：2024-10-07T14:58:23.584073+02:00
▼

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · S.aureus Protein Map Eap3 and Eap4 domains (Δ266-476)

浓度— – 5.0 缓冲液 / pH20 mM HEPES, 140 mM NaCl / 7.4
实验温度20.0 设备 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS)
波长0.1127 nm曝光2.0 s × 660

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Protein map
查看序列
NYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK
proteinStaphylococcus aureus (strain Mu50 / ATCC 700699)Q99QS1266–476monomer分子数 124.124 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1912[3]0.010389–0.471889 1/A含误差列缺失 048sasbdb/entries/n2/sasdvn2/source/SASDVN2.dat
▼

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)8.5—Å
i0Guinier18.6471—arbitrary
i0P(r)18.81—arbitrary
mwExperimental19.7—kDa
mwPorod13.0—kDa
porod_volumePorod28.0—ų
rgGuinier2.4730.41Å
rgP(r)2.57—Å

这些数值是 SASBDB 来源记录，不是 SAXSdb 对实验曲线重新计算的结果。

▼

3. 来源拟合与模型 Source Fits & Models

▶

4. 来源文件索引 Source Files

▶

5. 实验说明与论文 Experiment & Publication

▼

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”；未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM HEPES, 140 mM NaCl缓冲液浓度—
pH7.4添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2023-11-17储存 / 测量温度4.0 / 20.0
曝光时间2.0帧数660
波长0.1127样品-探测器距离2.1
光源X-ray synchrotron探测器Pilatus3 X 2M
机构 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS) · Berkeley, CA, USA
q 范围0.104 – 4.719样品体积 / 流速60.0 / 0.65

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/n2/sasdvn2/source/SASDVN2.datdownloaded48462683bedf410c8e897486309f619e71dcddc4b4057a1fd33adc776eb73a20569a3下载查看原文件源站
full_entry_zipsasbdb/entries/n2/sasdvn2/source/SASDVN2.zipdownloaded28240384221a4f6d45fadc7848e224b4721583c1e197ae4c4d3d132b2b31297032d2bb下载查看原文件源站
pddfsasbdb/entries/n2/sasdvn2/source/SASDVN2.outdownloaded821031e1cff68ff53c31c32daebea428af172999cdbd2e1e4013fca403ca47337b82c下载查看原文件源站
sascifsasbdb/entries/n2/sasdvn2/source/SASDVN2.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/n2/sasdvn2/source/summary.jsondownloaded105624cf2a97556677b12ac6a2b634d52ab8973a166dfc154f4a250c82feec51b961e下载查看原文件源站
curve：来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.dat",
  "role": "curve",
  "sha256": "683bedf410c8e897486309f619e71dcddc4b4057a1fd33adc776eb73a20569a3",
  "size": 48462,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDVN2.dat"
}
full_entry_zip：来源记录与 ZIP 内部目录（11 项）
{
  "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.zip",
  "role": "full_entry_zip",
  "sha256": "84221a4f6d45fadc7848e224b4721583c1e197ae4c4d3d132b2b31297032d2bb",
  "size": 282403,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDVN2.zip",
  "zip_member_count": 11,
  "zip_members": [
    {
      "crc32": "2c8d04a7",
      "name": "SASDVN2/experimental_data/SASDVN2.dat",
      "size": 48462
    },
    {
      "crc32": "b8992010",
      "name": "SASDVN2/pddf/SASDVN2.out",
      "size": 82103
    },
    {
      "crc32": "91c0b308",
      "name": "SASDVN2/SASDVN2_fit1.dat",
      "size": 49514
    },
    {
      "crc32": "beb5c4be",
      "name": "SASDVN2/SASDVN2_fit1_model1.pdb",
      "size": 138208
    },
    {
      "crc32": "36d02aa5",
      "name": "SASDVN2/SASDVN2_fit2.dat",
      "size": 49514
    },
    {
      "crc32": "ae1a0dcc",
      "name": "SASDVN2/SASDVN2_fit2_model1.pdb",
      "size": 138208
    },
    {
      "crc32": "d25d6c76",
      "name": "SASDVN2/SASDVN2_fit2_model2.pdb",
      "size": 138208
    },
    {
      "crc32": "9aef434e",
      "name": "SASDVN2/SASDVN2_fit3.dat",
      "size": 49514
    },
    {
      "crc32": "f3a2a8e0",
      "name": "SASDVN2/SASDVN2_fit3_model1.pdb",
      "size": 138208
    },
    {
      "crc32": "d25d6c76",
      "name": "SASDVN2/SASDVN2_fit3_model2.pdb",
      "size": 138208
    },
    {
      "crc32": "87271ea5",
      "name": "SASDVN2/SASDVN2_fit3_model3.pdb",
      "size": 138208
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf：来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.out",
  "role": "pddf",
  "sha256": "1e1cff68ff53c31c32daebea428af172999cdbd2e1e4013fca403ca47337b82c",
  "size": 82103,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDVN2.out"
}
sascif：来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.sascif",
  "role": "sascif",
  "status": "not_available",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVN2.sascif"
}
summary：来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/summary.json",
  "sha256": "4cf2a97556677b12ac6a2b634d52ab8973a166dfc154f4a250c82feec51b961e",
  "size": 10562,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVN2/"
}

全部来源字段（无筛选）

这里自动展开来源记录中的每一个字段，包括空值、列表成员和页面上方已展示过的字段。

summary.json：241 个字段值
字段路径原始值
codeSASDVN2
statusPublished
type_of_curveSEC-SAS
angular_unit1/A
project.titleS. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.
project.publication.titleS. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.
project.publication.author_listMishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV
project.publication.journalJ Biol Chem
project.publication.doi10.1016/j.jbc.2024.107627
project.publication.pmid39098536
project.publication.published_date2024 Aug 3
project.statusreleased
project.submitted_date2024-06-17
project.released_date2024-07-22
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDVN2.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDVN2.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVN2_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVN2_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVN2_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVN2_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDVN2.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus3 X 2M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameAdvanced Light Source (ALS)
experiment.instrument.cityBerkeley, CA
experiment.instrument.countryUSA
experiment.instrument.beamline_name12.3.1 (SIBYLS)
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameProtein map
experiment.sample.molecule[0].short_nameEap34
experiment.sample.molecule[0].sequenceNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK
experiment.sample.molecule[0].organismStaphylococcus aureus (strain Mu50 / ATCC 700699)
experiment.sample.molecule[0].uniprot_codeQ99QS1
experiment.sample.molecule[0].uniprot_range_first266
experiment.sample.molecule[0].uniprot_range_last476
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMKFKSLITTTLALGVIASTGANFNTNEASAAAKPLDKSSSTLHHGHSNIQIPYTITVNGT SQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVI DLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFN KNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANL INSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLT SQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEI TVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISD LDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK
experiment.sample.molecule[0].mw24.124
experiment.sample.molecule[0].total_mw24.124
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionEap34
experiment.sample.buffer.name20 mM HEPES, 140 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameS.aureus Protein Map Eap3 and Eap4 domains (Δ266-476)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameKansas State University
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameNitin
experiment.contributor[0].contributor_surnameMishra
experiment.contributor[0].orcidhttps://orcid.org/0000-0001-8931-7351
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2023-11-17
experiment.storage_temperature4.0
experiment.cell_temperature20.0
experiment.exposure_time2.0
experiment.number_of_frames660
experiment.wavelength0.1127
experiment.sample_detector_distance2.1
experiment.concentration_minnull
experiment.concentration_max5.0
experiment.sample_volume60.0
experiment.flow_rate0.65
experiment.s_min0.104
experiment.s_max4.719
experiment.total_exposure_timenull
experiment.seccolumn40
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit1_model1_img.png
fits[0].models[0].softwareMultiFoXS
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
fits[0].models[0].software_versionnull
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVN2_fit1_model1.pdb
fits[0].models[0].model_mw24.15
fits[0].models[0].bead_radiusnull
fits[0].models[0].lognull
fits[0].models[0].symmetrynull
fits[0].models[0].commentnull
fits[0].models[0].user1074
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVN2_fit1_fitfoxs_img.png
fits[0].softwareFoXS
fits[0].chi_square_value0.814083
fits[0].p_value0.8343
fits[0].fit_residual_plotSASDVN2_fit1_fitfoxsresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDVN2_fit1.dat
fits[0].fit_lognull
fits[0].software_versionnull
fits[0].description
fits[1].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit2_model1_img.png
fits[1].models[0].softwareMultiFoXS
fits[1].models[0].pdb_link[]
fits[1].models[0].model_titlenull
fits[1].models[0].type_of_modelatomic
fits[1].models[0].software_versionnull
fits[1].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVN2_fit2_model1.pdb
fits[1].models[0].model_mw24.15
fits[1].models[0].bead_radiusnull
fits[1].models[0].lognull
fits[1].models[0].symmetrynull
fits[1].models[0].commentnull
fits[1].models[0].user1074
fits[1].models[1].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit2_model2_img.png
fits[1].models[1].softwareMultiFoXS
fits[1].models[1].pdb_link[]
fits[1].models[1].model_titlenull
fits[1].models[1].type_of_modelatomic
fits[1].models[1].software_versionnull
fits[1].models[1].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVN2_fit2_model2.pdb
fits[1].models[1].model_mw24.15
fits[1].models[1].bead_radiusnull
fits[1].models[1].lognull
fits[1].models[1].symmetrynull
fits[1].models[1].commentnull
fits[1].models[1].user1074
fits[1].fit_unit1/A
fits[1].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVN2_fit2_fitfoxs_img.png
fits[1].softwareFoXS
fits[1].chi_square_value0.816708
fits[1].p_value0.8343
fits[1].fit_residual_plotSASDVN2_fit2_fitfoxsresiduals_img.png
fits[1].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDVN2_fit2.dat
fits[1].fit_lognull
fits[1].software_versionnull
fits[1].description
fits[2].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit3_model1_img.png
fits[2].models[0].softwareMultiFoXS
fits[2].models[0].pdb_link[]
fits[2].models[0].model_titlenull
fits[2].models[0].type_of_modelatomic
fits[2].models[0].software_versionnull
fits[2].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVN2_fit3_model1.pdb
fits[2].models[0].model_mw24.15
fits[2].models[0].bead_radiusnull
fits[2].models[0].lognull
fits[2].models[0].symmetrynull
fits[2].models[0].commentnull
fits[2].models[0].user1074
fits[2].models[1].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit3_model2_img.png
fits[2].models[1].softwareMultiFoXS
fits[2].models[1].pdb_link[]
fits[2].models[1].model_titlenull
fits[2].models[1].type_of_modelatomic
fits[2].models[1].software_versionnull
fits[2].models[1].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVN2_fit3_model2.pdb
fits[2].models[1].model_mw24.15
fits[2].models[1].bead_radiusnull
fits[2].models[1].lognull
fits[2].models[1].symmetrynull
fits[2].models[1].commentnull
fits[2].models[1].user1074
fits[2].models[2].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit3_model3_img.png
fits[2].models[2].softwareMultiFoXS
fits[2].models[2].pdb_link[]
fits[2].models[2].model_titlenull
fits[2].models[2].type_of_modelatomic
fits[2].models[2].software_versionnull
fits[2].models[2].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVN2_fit3_model3.pdb
fits[2].models[2].model_mw24.15
fits[2].models[2].bead_radiusnull
fits[2].models[2].lognull
fits[2].models[2].symmetrynull
fits[2].models[2].commentnull
fits[2].models[2].user1074
fits[2].fit_unit1/A
fits[2].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVN2_fit3_fitfoxs_img.png
fits[2].softwareFoXS
fits[2].chi_square_value0.813946
fits[2].p_value0.8343
fits[2].fit_residual_plotSASDVN2_fit3_fitfoxsresiduals_img.png
fits[2].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDVN2_fit3.dat
fits[2].fit_lognull
fits[2].software_versionnull
fits[2].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw19.7
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw13.0
porod_mw_errornull
pddf_i018.81
pddf_i0_errornull
guinier_i018.6471
guinier_i0_errornull
pddf_rg2.57
pddf_rg_errornull
guinier_rg2.473
guinier_rg_error0.41
pddf_dmax8.5
pddf_dmax_errornull
porod_volume28.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first8
guinier_point_last77
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDVN2_datloglog_img.png
symmetrynull
last_modified2024-10-07T14:58:23.584073+02:00
bragg_peak[]
manifest.json：34 个字段值
字段路径原始值
codeSASDVN2
statussuccess
started_at2026-08-11T16:46:24.069541+00:00
finished_at2026-08-11T16:46:32.714073+00:00
source_last_modified2024-10-07T14:58:23.584073+02:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDVN2/
files[0].path/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/summary.json
files[0].size10562
files[0].sha2564cf2a97556677b12ac6a2b634d52ab8973a166dfc154f4a250c82feec51b961e
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDVN2.dat
files[1].path/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.dat
files[1].size48462
files[1].sha256683bedf410c8e897486309f619e71dcddc4b4057a1fd33adc776eb73a20569a3
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDVN2.out
files[2].path/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.out
files[2].size82103
files[2].sha2561e1cff68ff53c31c32daebea428af172999cdbd2e1e4013fca403ca47337b82c
files[2].rolepddf
files[3].statusnot_available
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDVN2.sascif
files[3].path/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.sascif
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDVN2.zip
files[4].path/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.zip
files[4].size282403
files[4].sha25684221a4f6d45fadc7848e224b4721583c1e197ae4c4d3d132b2b31297032d2bb
files[4].rolefull_entry_zip
files[4].zip_member_count11
files[4].zip_validationcentral_directory_readable
查看完整 summary.json 原文
{
  "code": "SASDVN2",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.",
    "publication": {
      "title": "S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.",
      "author_list": "Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV",
      "journal": "J Biol Chem",
      "doi": "10.1016/j.jbc.2024.107627",
      "pmid": "39098536",
      "published_date": "2024 Aug 3"
    },
    "status": "released",
    "submitted_date": "2024-06-17",
    "released_date": "2024-07-22"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVN2.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVN2.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVN2_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVN2_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVN2_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVN2_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVN2.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus3 X 2M",
        "resolution": 172.0
      },
      "name": "Advanced Light Source (ALS)",
      "city": "Berkeley, CA",
      "country": "USA",
      "beamline_name": "12.3.1 (SIBYLS)",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Protein map",
          "short_name": "Eap34",
          "sequence": "NYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK",
          "organism": "Staphylococcus aureus (strain Mu50 / ATCC 700699)",
          "uniprot_code": "Q99QS1",
          "uniprot_range_first": 266,
          "uniprot_range_last": 476,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MKFKSLITTTLALGVIASTGANFNTNEASAAAKPLDKSSSTLHHGHSNIQIPYTITVNGT\nSQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVI\nDLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFN\nKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANL\nINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLT\nSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEI\nTVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISD\nLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK",
          "mw": 24.124,
          "total_mw": 24.124,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": "Eap34"
        }
      ],
      "buffer": {
        "name": "20 mM HEPES, 140 mM NaCl",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.4,
        "deuteration": null
      },
      "purity_method": null,
      "name": "S.aureus Protein Map Eap3 and Eap4 domains (Δ266-476)",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": null,
            "full_name": "Kansas State University",
            "webpage": null
          }
        ],
        "contributor_name": "Nitin",
        "contributor_surname": "Mishra",
        "orcid": "https://orcid.org/0000-0001-8931-7351"
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2023-11-17",
    "storage_temperature": 4.0,
    "cell_temperature": 20.0,
    "exposure_time": 2.0,
    "number_of_frames": 660,
    "wavelength": 0.1127,
    "sample_detector_distance": 2.1,
    "concentration_min": null,
    "concentration_max": 5.0,
    "sample_volume": 60.0,
    "flow_rate": 0.65,
    "s_min": 0.104,
    "s_max": 4.719,
    "total_exposure_time": null,
    "seccolumn": 40
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit1_model1_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVN2_fit1_model1.pdb",
          "model_mw": 24.15,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVN2_fit1_fitfoxs_img.png",
      "software": "FoXS",
      "chi_square_value": 0.814083,
      "p_value": 0.8343,
      "fit_residual_plot": "SASDVN2_fit1_fitfoxsresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVN2_fit1.dat",
      "fit_log": null,
      "software_version": null,
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit2_model1_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVN2_fit2_model1.pdb",
          "model_mw": 24.15,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit2_model2_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVN2_fit2_model2.pdb",
          "model_mw": 24.15,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVN2_fit2_fitfoxs_img.png",
      "software": "FoXS",
      "chi_square_value": 0.816708,
      "p_value": 0.8343,
      "fit_residual_plot": "SASDVN2_fit2_fitfoxsresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVN2_fit2.dat",
      "fit_log": null,
      "software_version": null,
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit3_model1_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVN2_fit3_model1.pdb",
          "model_mw": 24.15,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit3_model2_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVN2_fit3_model2.pdb",
          "model_mw": 24.15,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVN2_fit3_model3_img.png",
          "software": "MultiFoXS",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVN2_fit3_model3.pdb",
          "model_mw": 24.15,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVN2_fit3_fitfoxs_img.png",
      "software": "FoXS",
      "chi_square_value": 0.813946,
      "p_value": 0.8343,
      "fit_residual_plot": "SASDVN2_fit3_fitfoxsresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVN2_fit3.dat",
      "fit_log": null,
      "software_version": null,
      "description": ""
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": "arbitrary",
  "experimental_mw": 19.7,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 13.0,
  "porod_mw_error": null,
  "pddf_i0": 18.81,
  "pddf_i0_error": null,
  "guinier_i0": 18.6471,
  "guinier_i0_error": null,
  "pddf_rg": 2.57,
  "pddf_rg_error": null,
  "guinier_rg": 2.473,
  "guinier_rg_error": 0.41,
  "pddf_dmax": 8.5,
  "pddf_dmax_error": null,
  "porod_volume": 28.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 8,
  "guinier_point_last": 77,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDVN2_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2024-10-07T14:58:23.584073+02:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
  "code": "SASDVN2",
  "status": "success",
  "started_at": "2026-08-11T16:46:24.069541+00:00",
  "finished_at": "2026-08-11T16:46:32.714073+00:00",
  "source_last_modified": "2024-10-07T14:58:23.584073+02:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVN2/",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/summary.json",
      "size": 10562,
      "sha256": "4cf2a97556677b12ac6a2b634d52ab8973a166dfc154f4a250c82feec51b961e"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDVN2.dat",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.dat",
      "size": 48462,
      "sha256": "683bedf410c8e897486309f619e71dcddc4b4057a1fd33adc776eb73a20569a3",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDVN2.out",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.out",
      "size": 82103,
      "sha256": "1e1cff68ff53c31c32daebea428af172999cdbd2e1e4013fca403ca47337b82c",
      "role": "pddf"
    },
    {
      "status": "not_available",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVN2.sascif",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.sascif",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDVN2.zip",
      "path": "/data/saxsdb/sasbdb/entries/n2/sasdvn2/source/SASDVN2.zip",
      "size": 282403,
      "sha256": "84221a4f6d45fadc7848e224b4721583c1e197ae4c4d3d132b2b31297032d2bb",
      "role": "full_entry_zip",
      "zip_member_count": 11,
      "zip_validation": "central_directory_readable"
    }
  ]
}