SASDVP2

Multimeric complex cosisted of Human Cathepsin G-Neutrophil elastase tetramers bound to S.aureus Protein Map Eap3 and Eap4 domains

Data type: SASBDB experimental data Status: Published Curve type: Single concentration Last updated: 2024-10-07T14:58:23.683355+02:00
▼

1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Multimeric complex cosisted of Human Cathepsin G-Neutrophil elastase tetramers bound to S.aureus Protein Map Eap3 and Eap4 domains

Concentration— – 5.0 Buffer / pH20 mM HEPES, 140 mM NaCl / 7.4
Experimental temperature20.0 Facility / beamlineAdvanced Light Source (ALS) / 12.3.1 (SIBYLS)
Wavelength0.1127 nmExposure2.0 s × 848

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Cathepsin G
View sequence
IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMR
proteinHomo sapiensP0831122–245tetramerMolecule count 425.354 kDa
Neutrophil elastase
View sequence
IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ
proteinHomo sapiensP0824631–249tetramerMolecule count 423.295 kDa
Eap34
View sequence
NYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK
proteinStaphylococcus aureus (strain Mu50 / ATCC 700699)Q99QS1268–438dimerMolecule count 224.124 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
1848[3]0.0109–0.43999 1/AHas uncertainty columnMissing 00sasbdb/entries/p2/sasdvp2/source/SASDVP2.dat
▼

2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)19.37—Å
i0Guinier134.1—arbitrary
i0P(r)135.3—arbitrary
mwExperimental210.5—kDa
mwPorod310.0—kDa
porod_volumePorod500.0—ų
rgGuinier5.3670.105Å
rgP(r)5.54—Å

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

▼

3. Source Fits and Models Source Fits & Models

▶

4. Source File Index Source Files

▶

5. Experiment Description and Publication Experiment & Publication

▼

6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name20 mM HEPES, 140 mM NaClBuffer concentration—
pH7.4Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2023-06-03Storage / measurement temperature20.0 / 20.0
Exposure time2.0Frames848
Wavelength0.1127Sample-to-detector distance2.1
SourceX-ray synchrotronDetectorPilatus3 X 2M
Facility / beamlineAdvanced Light Source (ALS) / 12.3.1 (SIBYLS) · Berkeley, CA, USA
q range0.109 – 4.4Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

CategoryFileStatusSizeChecksumDownload and View
curvesasbdb/entries/p2/sasdvp2/source/SASDVP2.datdownloaded23013c7a8b63de6e6c49d03ef0238b6e9d040816fea86b213fda48cb09a25952197b5DownloadView source fileSource site
full_entry_zipsasbdb/entries/p2/sasdvp2/source/SASDVP2.zipdownloaded34814166c2b950599e1eca48d8622afddcad0ec6953598181b9df2ff49bfe078a941589DownloadView source fileSource site
pddfsasbdb/entries/p2/sasdvp2/source/SASDVP2.outdownloaded300883e734a9687ddb465649934124bd3e2ae543b739423fb3e015a140b5e2bcefc59DownloadView source fileSource site
sascifsasbdb/entries/p2/sasdvp2/source/SASDVP2.sascifnot_available——DownloadView source fileSource site
summarysasbdb/entries/p2/sasdvp2/source/summary.jsondownloaded11225850b139057095dfe327b02c7e1fa08c6ad69445b99cddb303141d5773a0af6e1DownloadView source fileSource site
curve:source record
{
  "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.dat",
  "role": "curve",
  "sha256": "c7a8b63de6e6c49d03ef0238b6e9d040816fea86b213fda48cb09a25952197b5",
  "size": 23013,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDVP2.dat"
}
full_entry_zip:source record and ZIP contents (8 items)
{
  "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.zip",
  "role": "full_entry_zip",
  "sha256": "6c2b950599e1eca48d8622afddcad0ec6953598181b9df2ff49bfe078a941589",
  "size": 3481416,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDVP2.zip",
  "zip_member_count": 8,
  "zip_members": [
    {
      "crc32": "5db592e1",
      "name": "SASDVP2/experimental_data/SASDVP2.dat",
      "size": 23013
    },
    {
      "crc32": "828c60d2",
      "name": "SASDVP2/pddf/SASDVP2.out",
      "size": 30088
    },
    {
      "crc32": "1bcd6d6e",
      "name": "SASDVP2/SASDVP2_fit1.dat",
      "size": 46060
    },
    {
      "crc32": "64db710e",
      "name": "SASDVP2/SASDVP2_fit1_model1.pdb",
      "size": 2652138
    },
    {
      "crc32": "9375d654",
      "name": "SASDVP2/SASDVP2_fit2.dat",
      "size": 46060
    },
    {
      "crc32": "7672dc58",
      "name": "SASDVP2/SASDVP2_fit2_model1.pdb",
      "size": 5305899
    },
    {
      "crc32": "671657cd",
      "name": "SASDVP2/SASDVP2_fit3.dat",
      "size": 46060
    },
    {
      "crc32": "3c11bb13",
      "name": "SASDVP2/SASDVP2_fit3_model1.pdb",
      "size": 7958849
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf:source record
{
  "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.out",
  "role": "pddf",
  "sha256": "3e734a9687ddb465649934124bd3e2ae543b739423fb3e015a140b5e2bcefc59",
  "size": 30088,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDVP2.out"
}
sascif:source record
{
  "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.sascif",
  "role": "sascif",
  "status": "not_available",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVP2.sascif"
}
summary:source record
{
  "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/summary.json",
  "sha256": "850b139057095dfe327b02c7e1fa08c6ad69445b99cddb303141d5773a0af6e1",
  "size": 11225,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVP2/"
}

All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:236 field values
Field pathRaw value
codeSASDVP2
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleS. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.
project.publication.titleS. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.
project.publication.author_listMishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV
project.publication.journalJ Biol Chem
project.publication.doi10.1016/j.jbc.2024.107627
project.publication.pmid39098536
project.publication.published_date2024 Aug 3
project.statusreleased
project.submitted_date2024-06-17
project.released_date2024-07-22
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDVP2.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDVP2.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVP2_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVP2_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVP2_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVP2_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDVP2.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus3 X 2M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameAdvanced Light Source (ALS)
experiment.instrument.cityBerkeley, CA
experiment.instrument.countryUSA
experiment.instrument.beamline_name12.3.1 (SIBYLS)
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameCathepsin G
experiment.sample.molecule[0].short_nameCG
experiment.sample.molecule[0].sequenceIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMR
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeP08311
experiment.sample.molecule[0].uniprot_range_first22
experiment.sample.molecule[0].uniprot_range_last245
experiment.sample.molecule[0].oligomerizationtetramer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVL TAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRR NRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYD PRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRT TMRSFKLLDQMETPL
experiment.sample.molecule[0].mw25.354
experiment.sample.molecule[0].total_mw101.416
experiment.sample.molecule[0].number_molecules4
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.molecule[1].long_nameNeutrophil elastase
experiment.sample.molecule[1].short_nameNE
experiment.sample.molecule[1].sequenceIVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ
experiment.sample.molecule[1].organismHomo sapiens
experiment.sample.molecule[1].uniprot_codeP08246
experiment.sample.molecule[1].uniprot_range_first31
experiment.sample.molecule[1].uniprot_range_last249
experiment.sample.molecule[1].oligomerizationtetramer
experiment.sample.molecule[1].molecular_typeprotein
experiment.sample.molecule[1].uniprot_sequenceMTLGRRLACLFLACVLPALLLGGTALASEIVGGRRARPHAWPFMVSLQLRGGHFCGATLI APNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVI LQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSL CRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVN WIDSIIQRSEDNPCPHPRDPDPASRTH
experiment.sample.molecule[1].mw23.295
experiment.sample.molecule[1].total_mw93.18
experiment.sample.molecule[1].number_molecules4
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_description
experiment.sample.molecule[2].long_nameEap34
experiment.sample.molecule[2].short_nameEap34
experiment.sample.molecule[2].sequenceNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK
experiment.sample.molecule[2].organismStaphylococcus aureus (strain Mu50 / ATCC 700699)
experiment.sample.molecule[2].uniprot_codeQ99QS1
experiment.sample.molecule[2].uniprot_range_first268
experiment.sample.molecule[2].uniprot_range_last438
experiment.sample.molecule[2].oligomerizationdimer
experiment.sample.molecule[2].molecular_typeprotein
experiment.sample.molecule[2].uniprot_sequenceMKFKSLITTTLALGVIASTGANFNTNEASAAAKPLDKSSSTLHHGHSNIQIPYTITVNGT SQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVI DLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFN KNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANL INSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLT SQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEI TVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISD LDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK
experiment.sample.molecule[2].mw24.124
experiment.sample.molecule[2].total_mw48.248
experiment.sample.molecule[2].number_molecules2
experiment.sample.molecule[2].complex_stateFalse
experiment.sample.molecule[2].deuterationnull
experiment.sample.molecule[2].molecule_sourcebiological
experiment.sample.molecule[2].molecule_description
experiment.sample.buffer.name20 mM HEPES, 140 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameMultimeric complex cosisted of Human Cathepsin G-Neutrophil elastase tetramers bound to S.aureus Protein Map Eap3 and Eap4 domains
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressnull
experiment.contributor[0].affiliation[0].full_nameKansas State University
experiment.contributor[0].affiliation[0].webpagenull
experiment.contributor[0].contributor_nameNitin
experiment.contributor[0].contributor_surnameMishra
experiment.contributor[0].orcidhttps://orcid.org/0000-0001-8931-7351
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2023-06-03
experiment.storage_temperature20.0
experiment.cell_temperature20.0
experiment.exposure_time2.0
experiment.number_of_frames848
experiment.wavelength0.1127
experiment.sample_detector_distance2.1
experiment.concentration_minnull
experiment.concentration_max5.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.109
experiment.s_max4.4
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVP2_fit1_model1_img.png
fits[0].models[0].softwareBILBOMD
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
fits[0].models[0].software_versionnull
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVP2_fit1_model1.pdb
fits[0].models[0].model_mw241.4
fits[0].models[0].bead_radiusnull
fits[0].models[0].lognull
fits[0].models[0].symmetrynull
fits[0].models[0].commentnull
fits[0].models[0].user1074
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVP2_fit1_fitfoxs_img.png
fits[0].softwareFoXS
fits[0].chi_square_value0.325665
fits[0].p_value0.0
fits[0].fit_residual_plotSASDVP2_fit1_fitfoxsresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDVP2_fit1.dat
fits[0].fit_lognull
fits[0].software_versionnull
fits[0].description
fits[1].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVP2_fit2_model1_img.png
fits[1].models[0].softwareBILBOMD
fits[1].models[0].pdb_link[]
fits[1].models[0].model_titlenull
fits[1].models[0].type_of_modelatomic
fits[1].models[0].software_versionnull
fits[1].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVP2_fit2_model1.pdb
fits[1].models[0].model_mw241.5
fits[1].models[0].bead_radiusnull
fits[1].models[0].lognull
fits[1].models[0].symmetrynull
fits[1].models[0].commentnull
fits[1].models[0].user1074
fits[1].fit_unit1/A
fits[1].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVP2_fit2_fitfoxs_img.png
fits[1].softwareFoXS
fits[1].chi_square_value0.123939
fits[1].p_value0.0
fits[1].fit_residual_plotSASDVP2_fit2_fitfoxsresiduals_img.png
fits[1].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDVP2_fit2.dat
fits[1].fit_lognull
fits[1].software_versionnull
fits[1].description
fits[2].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDVP2_fit3_model1_img.png
fits[2].models[0].softwareBILBOMD
fits[2].models[0].pdb_link[]
fits[2].models[0].model_titlenull
fits[2].models[0].type_of_modelatomic
fits[2].models[0].software_versionnull
fits[2].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDVP2_fit3_model1.pdb
fits[2].models[0].model_mw241.5
fits[2].models[0].bead_radiusnull
fits[2].models[0].lognull
fits[2].models[0].symmetrynull
fits[2].models[0].commentnull
fits[2].models[0].user1074
fits[2].fit_unit1/A
fits[2].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVP2_fit3_fitfoxs_img.png
fits[2].softwareFoXS
fits[2].chi_square_value0.104778
fits[2].p_value0.0
fits[2].fit_residual_plotSASDVP2_fit3_fitfoxsresiduals_img.png
fits[2].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDVP2_fit3.dat
fits[2].fit_lognull
fits[2].software_versionnull
fits[2].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw210.5
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw310.0
porod_mw_errornull
pddf_i0135.3
pddf_i0_errornull
guinier_i0134.1
guinier_i0_errornull
pddf_rg5.54
pddf_rg_errornull
guinier_rg5.367
guinier_rg_error0.105
pddf_dmax19.37
pddf_dmax_errornull
porod_volume500.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first2
guinier_point_last28
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDVP2_datloglog_img.png
symmetrynull
last_modified2024-10-07T14:58:23.683355+02:00
bragg_peak[]
manifest.json:34 field values
Field pathRaw value
codeSASDVP2
statussuccess
started_at2026-08-11T16:47:28.651571+00:00
finished_at2026-08-11T16:47:37.224070+00:00
source_last_modified2024-10-07T14:58:23.683355+02:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDVP2/
files[0].path/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/summary.json
files[0].size11225
files[0].sha256850b139057095dfe327b02c7e1fa08c6ad69445b99cddb303141d5773a0af6e1
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDVP2.dat
files[1].path/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.dat
files[1].size23013
files[1].sha256c7a8b63de6e6c49d03ef0238b6e9d040816fea86b213fda48cb09a25952197b5
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDVP2.out
files[2].path/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.out
files[2].size30088
files[2].sha2563e734a9687ddb465649934124bd3e2ae543b739423fb3e015a140b5e2bcefc59
files[2].rolepddf
files[3].statusnot_available
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDVP2.sascif
files[3].path/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.sascif
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDVP2.zip
files[4].path/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.zip
files[4].size3481416
files[4].sha2566c2b950599e1eca48d8622afddcad0ec6953598181b9df2ff49bfe078a941589
files[4].rolefull_entry_zip
files[4].zip_member_count8
files[4].zip_validationcentral_directory_readable
View the complete summary.json source
{
  "code": "SASDVP2",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.",
    "publication": {
      "title": "S. aureus Eap is a polyvalent inhibitor of neutrophil serine proteases.",
      "author_list": "Mishra N, Gido CD, Herdendorf TJ, Hammel M, Hura GL, Fu ZQ, Geisbrecht BV",
      "journal": "J Biol Chem",
      "doi": "10.1016/j.jbc.2024.107627",
      "pmid": "39098536",
      "published_date": "2024 Aug 3"
    },
    "status": "released",
    "submitted_date": "2024-06-17",
    "released_date": "2024-07-22"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVP2.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVP2.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVP2_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVP2_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVP2_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVP2_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVP2.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus3 X 2M",
        "resolution": 172.0
      },
      "name": "Advanced Light Source (ALS)",
      "city": "Berkeley, CA",
      "country": "USA",
      "beamline_name": "12.3.1 (SIBYLS)",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Cathepsin G",
          "short_name": "CG",
          "sequence": "IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMR",
          "organism": "Homo sapiens",
          "uniprot_code": "P08311",
          "uniprot_range_first": 22,
          "uniprot_range_last": 245,
          "oligomerization": "tetramer",
          "molecular_type": "protein",
          "uniprot_sequence": "MQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVL\nTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRR\nNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRRGTDTLREVQLRVQRDRQCLRIFGSYD\nPRRQICVGDRRERKAAFKGDSGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRT\nTMRSFKLLDQMETPL",
          "mw": 25.354,
          "total_mw": 101.416,
          "number_molecules": 4,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
        },
        {
          "long_name": "Neutrophil elastase",
          "short_name": "NE",
          "sequence": "IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ",
          "organism": "Homo sapiens",
          "uniprot_code": "P08246",
          "uniprot_range_first": 31,
          "uniprot_range_last": 249,
          "oligomerization": "tetramer",
          "molecular_type": "protein",
          "uniprot_sequence": "MTLGRRLACLFLACVLPALLLGGTALASEIVGGRRARPHAWPFMVSLQLRGGHFCGATLI\nAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVI\nLQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSL\nCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVN\nWIDSIIQRSEDNPCPHPRDPDPASRTH",
          "mw": 23.295,
          "total_mw": 93.18,
          "number_molecules": 4,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
        },
        {
          "long_name": "Eap34",
          "short_name": "Eap34",
          "sequence": "NYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK",
          "organism": "Staphylococcus aureus (strain Mu50 / ATCC 700699)",
          "uniprot_code": "Q99QS1",
          "uniprot_range_first": 268,
          "uniprot_range_last": 438,
          "oligomerization": "dimer",
          "molecular_type": "protein",
          "uniprot_sequence": "MKFKSLITTTLALGVIASTGANFNTNEASAAAKPLDKSSSTLHHGHSNIQIPYTITVNGT\nSQNILSSLTFNKNQNISYKDIENKVKSVLYFNRGISDIDLRLSKQAEYTVHFKNGTKRVI\nDLKSGIYTADLINTSDIKAISVNVDTKKQPKDKAKANVQVPYTITVNGTSQNILSNLTFN\nKNQNISYKDLEGKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTANL\nINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLT\nSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEI\nTVKTGTKAKADRYVPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISD\nLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKK",
          "mw": 24.124,
          "total_mw": 48.248,
          "number_molecules": 2,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
        }
      ],
      "buffer": {
        "name": "20 mM HEPES, 140 mM NaCl",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.4,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Multimeric complex cosisted of Human Cathepsin G-Neutrophil elastase tetramers bound to S.aureus Protein Map Eap3 and Eap4 domains",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": null,
            "full_name": "Kansas State University",
            "webpage": null
          }
        ],
        "contributor_name": "Nitin",
        "contributor_surname": "Mishra",
        "orcid": "https://orcid.org/0000-0001-8931-7351"
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2023-06-03",
    "storage_temperature": 20.0,
    "cell_temperature": 20.0,
    "exposure_time": 2.0,
    "number_of_frames": 848,
    "wavelength": 0.1127,
    "sample_detector_distance": 2.1,
    "concentration_min": null,
    "concentration_max": 5.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.109,
    "s_max": 4.4,
    "total_exposure_time": null,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVP2_fit1_model1_img.png",
          "software": "BILBOMD",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVP2_fit1_model1.pdb",
          "model_mw": 241.4,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVP2_fit1_fitfoxs_img.png",
      "software": "FoXS",
      "chi_square_value": 0.325665,
      "p_value": 0.0,
      "fit_residual_plot": "SASDVP2_fit1_fitfoxsresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVP2_fit1.dat",
      "fit_log": null,
      "software_version": null,
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVP2_fit2_model1_img.png",
          "software": "BILBOMD",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVP2_fit2_model1.pdb",
          "model_mw": 241.5,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVP2_fit2_fitfoxs_img.png",
      "software": "FoXS",
      "chi_square_value": 0.123939,
      "p_value": 0.0,
      "fit_residual_plot": "SASDVP2_fit2_fitfoxsresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVP2_fit2.dat",
      "fit_log": null,
      "software_version": null,
      "description": ""
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVP2_fit3_model1_img.png",
          "software": "BILBOMD",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVP2_fit3_model1.pdb",
          "model_mw": 241.5,
          "bead_radius": null,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1074
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVP2_fit3_fitfoxs_img.png",
      "software": "FoXS",
      "chi_square_value": 0.104778,
      "p_value": 0.0,
      "fit_residual_plot": "SASDVP2_fit3_fitfoxsresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVP2_fit3.dat",
      "fit_log": null,
      "software_version": null,
      "description": ""
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": "arbitrary",
  "experimental_mw": 210.5,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 310.0,
  "porod_mw_error": null,
  "pddf_i0": 135.3,
  "pddf_i0_error": null,
  "guinier_i0": 134.1,
  "guinier_i0_error": null,
  "pddf_rg": 5.54,
  "pddf_rg_error": null,
  "guinier_rg": 5.367,
  "guinier_rg_error": 0.105,
  "pddf_dmax": 19.37,
  "pddf_dmax_error": null,
  "porod_volume": 500.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 2,
  "guinier_point_last": 28,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDVP2_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2024-10-07T14:58:23.683355+02:00",
  "bragg_peak": []
}
View the complete manifest.json source
{
  "code": "SASDVP2",
  "status": "success",
  "started_at": "2026-08-11T16:47:28.651571+00:00",
  "finished_at": "2026-08-11T16:47:37.224070+00:00",
  "source_last_modified": "2024-10-07T14:58:23.683355+02:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDVP2/",
      "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/summary.json",
      "size": 11225,
      "sha256": "850b139057095dfe327b02c7e1fa08c6ad69445b99cddb303141d5773a0af6e1"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDVP2.dat",
      "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.dat",
      "size": 23013,
      "sha256": "c7a8b63de6e6c49d03ef0238b6e9d040816fea86b213fda48cb09a25952197b5",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDVP2.out",
      "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.out",
      "size": 30088,
      "sha256": "3e734a9687ddb465649934124bd3e2ae543b739423fb3e015a140b5e2bcefc59",
      "role": "pddf"
    },
    {
      "status": "not_available",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVP2.sascif",
      "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.sascif",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDVP2.zip",
      "path": "/data/saxsdb/sasbdb/entries/p2/sasdvp2/source/SASDVP2.zip",
      "size": 3481416,
      "sha256": "6c2b950599e1eca48d8622afddcad0ec6953598181b9df2ff49bfe078a941589",
      "role": "full_entry_zip",
      "zip_member_count": 8,
      "zip_validation": "central_directory_readable"
    }
  ]
}