查看完整 summary.json 原文
{
"code": "SASDVS4",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Peripheral membrane protein endophilin B1 probes, perturbs and permeabilizes lipid bilayers",
"publication": {
"title": "Peripheral membrane protein endophilin B1 probes, perturbs and permeabilizes lipid bilayers",
"author_list": "Thorlacius A, Rulev M, Sundberg O, Sundborger-Lunna A",
"journal": "Communications Biology",
"doi": "10.1038/s42003-025-07610-1",
"pmid": null,
"published_date": "2025 Feb 05"
},
"status": "released",
"submitted_date": "2024-07-12",
"released_date": "2025-01-28"
},
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},
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"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
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{
"long_name": "Endophilin-B1",
"short_name": null,
"sequence": "MNIMDFNVKKLAADAGTFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKIWTEKIM\r\nKQTEVLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIK\r\nCGETQKRIGTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLK\r\nKAKAAETRNSSEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQ\r\nCYQYMLDLQKQLGSFPSNYLSNNNQTSVTPVPSVLPNAIGSSAMASTSGLVITSPSNLSD\r\nLKECSGSRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITY\r\nLELLN",
"organism": "Homo sapiens",
"uniprot_code": "Q9Y371",
"uniprot_range_first": 1,
"uniprot_range_last": 365,
"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MNIMDFNVKKLAADAGTFLSRAVQFTEEKLGQAEKTELDAHLENLLSKAECTKIWTEKIM\nKQTEVLLQPNPNARIEEFVYEKLDRKAPSRINNPELLGQYMIDAGTEFGPGTAYGNALIK\nCGETQKRIGTADRELIQTSALNFLTPLRNFIEGDYKTIAKERKLLQNKRLDLDAAKTRLK\nKAKAAETRNSSEQELRITQSEFDRQAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYAQ\nCYQYMLDLQKQLGSFPSNYLSNNNQTSVTPVPSVLPNAIGSSAMASTSGLVITSPSNLSD\nLKECSGSRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITY\nLELLN",
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"number_molecules": 2,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": ""
}
],
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"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 8.1,
"deuteration": null
},
"purity_method": null,
"name": "Endophilin B1 wild type (0.34mg/ml)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "Uppsala University",
"webpage": null
}
],
"contributor_name": "Maksim",
"contributor_surname": "Rulev",
"orcid": "https://orcid.org/0000-0001-6103-320X"
}
],
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"date": "2024-03-10",
"storage_temperature": 4.0,
"cell_temperature": 4.0,
"exposure_time": 1.0,
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},
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"comment": null,
"user": 1101
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVS4_fit1_fixed_fit_img.png",
"software": "DENSS",
"chi_square_value": 0.8116,
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"fit_residual_plot": "SASDVS4_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVS4_fit1.fit",
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"description": "CAUTION: A significant molecular weight discrepancy is apparent on comparing the quoted experimental molecular weight (98 kDa) and that calculated from the amino acid sequence of the protein dimer (68 kDa).",
"experiment_description": "Synchrotron SAXS data from solutions of endophilin B1 in 20 mM HEPES, 150 mM NaCl, 1 mM TCEP, 0.5 mM DTT, pH 8.1 were collected on the BM29 beam line at the ESRF (Grenoble, France) using a Pilatus3 2M detector at a sample-detector distance of 2.8 m and at a wavelength of λ = 0.09918 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). One solute concentration of 0.69 mg/ml was measured at 4°C. 15 successive 1 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
"tags": [],
"intensity_unit": "1/cm",
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"estimated_volume": null,
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"guinier_point_first": 2,
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"pddf_point_first": null,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDVS4_datloglog_img.png",
"symmetry": null,
"last_modified": "2025-02-05T17:23:17.881715+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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