SASDWF7

EccA5-N terminal domain and EspG5 complex of ESX-5 secretion pathway of Mycobacterium tuberculosis

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2026-02-22T17:39:35.038740+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · EccA5-N terminal domain and EspG5 complex of ESX-5 secretion pathway of Mycobacterium tuberculosis

浓度— – 4.0 缓冲液 / pH50mM Hepes 200mM NaCl / 8.0
实验温度10.0 设备 / 束线CSIR-Central Drug Research Institute / Anton Paar SAXSpace
波长0.154 nm曝光900.0 s × 4

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
ESX-5 secretion-associated protein EspG5
查看序列
MDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
proteinMycobacterium tuberculosis (strain ATCC 25618 / H37Rv)O53943—–—monomer分子数 132.4 kDa
ESX-5 secretion system protein EccA5 N-terminal domain
查看序列
GSHMTRPQAAAEDARNAMVAGLLASGISVNGLQPSHNPQVAAQMFTTATRLDPKMCDAWLARLLAGDQSIEVLAGAWAAVRTFGWETRRLGVTDLQFRPEVSDGLFLRLAITSVDSLACAYAAVLAEAKRYQEAAELLDATDPRHPFDAELVSYVRGVLYFRTKRWPDVLAQFPEATQWRHPELKAAGAAMATTALASLGVFEEAFRRAQEAIEGDRVPGAANIALYTQGMCLRHVGREEEAVELLRRVYSRDAKFTPAREALDNPNFRLILTDPETIEAR
proteinMycobacterium tuberculosis (strain ATCC 25618 / H37Rv)P9WPI11–278monomer分子数 130.9 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1924[3]0.094392–6.001 1/nm含误差列缺失 01sasbdb/entries/f7/sasdwf7/source/SASDWF7.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)10.74—nm
i0Guinier66692.4—arbitrary
i0P(r)66240.0—arbitrary
mwExperimental53.15—kDa
mwPorod55.0—kDa
porod_volumePorod84.25—nm³
rgGuinier3.3190.398nm
rgP(r)3.362—nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50mM Hepes 200mM NaCl缓冲液浓度—
pH8.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2025-01-28储存 / 测量温度4.0 / 10.0
曝光时间900.0帧数4
波长0.154样品-探测器距离0.317
光源X-ray in house探测器Mythen2 R 1K
机构 / 束线CSIR-Central Drug Research Institute / Anton Paar SAXSpace · Lucknow, India
q 范围0.094 – 6.001样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/f7/sasdwf7/source/SASDWF7.datdownloaded426283e0144d91743833d4a5a7dc8ebcaae2131482af1f8b646d59e2efd3142420fd7下载查看原文件源站
full_entry_zipsasbdb/entries/f7/sasdwf7/source/SASDWF7.zipdownloaded41403495e46c4c8102d5753def89b823aba966bbd1e60422b5ef2950569b5b58cffad下载查看原文件源站
pddfsasbdb/entries/f7/sasdwf7/source/SASDWF7.outdownloaded37219d9575450d078d5d14abbb2f6da46cbe1501befb0ed945cd8c23b8a15d20539e6下载查看原文件源站
sascifsasbdb/entries/f7/sasdwf7/source/SASDWF7.sascifnot_available——下载查看原文件源站
summarysasbdb/entries/f7/sasdwf7/source/summary.jsondownloaded83909fd5f0d976d34072874a6b95a86b6c0c78290d4cf06c83dd5c6015f6faee5bbb下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:168 个字段值
字段路径原始值
codeSASDWF7
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleSAXS analysis of EccA5 N-terminal domain and EspG5 of ESX-5 secretion pathway of Mycobacterium tuberculosis
project.publicationnull
project.statusreleased
project.submitted_date2025-02-12
project.released_date2026-02-12
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDWF7.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDWF7.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWF7_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWF7_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDWF7_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWF7_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDWF7.sascif
experiment.instrument.detector.typeHybrid Photon Counting (HPC)
experiment.instrument.detector.nameMythen2 R 1K
experiment.instrument.detector.resolutionnull
experiment.instrument.nameCSIR-Central Drug Research Institute
experiment.instrument.cityLucknow
experiment.instrument.countryIndia
experiment.instrument.beamline_nameAnton Paar SAXSpace
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray in house
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameESX-5 secretion-associated protein EspG5
experiment.sample.molecule[0].short_nameEspG5
experiment.sample.molecule[0].sequenceMDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQGIVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVLARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEMLEATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSASVLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
experiment.sample.molecule[0].organismMycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
experiment.sample.molecule[0].uniprot_codeO53943
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMDQQSTRTDITVNVDGFWMLQALLDIRHVAPELRCRPYVSTDSNDWLNEHPGMAVMREQG IVVNDAVNEQVAARMKVLAAPDLEVVALLSRGKLLYGVIDDENQPPGSRDIPDNEFRVVL ARRGQHWVSAVRVGNDITVDDVTVSDSASIAALVMDGLESIHHADPAAINAVNVPMEEML EATKSWQESGFNVFSGGDLRRMGISAATVAALGQALSDPAAEVAVYARQYRDDAKGPSAS VLSLKDGSGGRIALYQQARTAGSGEAWLAICPATPQLVQVGVKTVLDTLPYGEWKTHSRV
experiment.sample.molecule[0].mw32.4
experiment.sample.molecule[0].total_mw32.4
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.molecule[1].long_nameESX-5 secretion system protein EccA5 N-terminal domain
experiment.sample.molecule[1].short_nameEccA5NT
experiment.sample.molecule[1].sequenceGSHMTRPQAAAEDARNAMVAGLLASGISVNGLQPSHNPQVAAQMFTTATRLDPKMCDAWLARLLAGDQSIEVLAGAWAAVRTFGWETRRLGVTDLQFRPEVSDGLFLRLAITSVDSLACAYAAVLAEAKRYQEAAELLDATDPRHPFDAELVSYVRGVLYFRTKRWPDVLAQFPEATQWRHPELKAAGAAMATTALASLGVFEEAFRRAQEAIEGDRVPGAANIALYTQGMCLRHVGREEEAVELLRRVYSRDAKFTPAREALDNPNFRLILTDPETIEAR
experiment.sample.molecule[1].organismMycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
experiment.sample.molecule[1].uniprot_codeP9WPI1
experiment.sample.molecule[1].uniprot_range_first1
experiment.sample.molecule[1].uniprot_range_last278
experiment.sample.molecule[1].oligomerizationmonomer
experiment.sample.molecule[1].molecular_typeprotein
experiment.sample.molecule[1].uniprot_sequenceMTRPQAAAEDARNAMVAGLLASGISVNGLQPSHNPQVAAQMFTTATRLDPKMCDAWLARL LAGDQSIEVLAGAWAAVRTFGWETRRLGVTDLQFRPEVSDGLFLRLAITSVDSLACAYAA VLAEAKRYQEAAELLDATDPRHPFDAELVSYVRGVLYFRTKRWPDVLAQFPEATQWRHPE LKAAGAAMATTALASLGVFEEAFRRAQEAIEGDRVPGAANIALYTQGMCLRHVGREEEAV ELLRRVYSRDAKFTPAREALDNPNFRLILTDPETIEARTDPWDPDSAPTRAQTEAARHAE MAAKYLAEGDAELNAMLGMEQAKKEIKLIKSTTKVNLARAKMGLPVPVTSRHTLLLGPPG TGKTSVARAFTKQLCGLTVLRKPLVVETSRTKLLGRYMADAEKNTEEMLEGALGGAVFFD EMHTLHEKGYSQGDPYGNAIINTLLLYMENHRDELVVFGAGYAKAMEKMLEVNQGLRRRF STVIEFFSYTPQELIALTQLMGRENEDVITEEESQVLLPSYTKFYMEQSYSEDGDLIRGI DLLGNAGFVRNVVEKARDHRSFRLDDEDLDAVLASDLTEFSEDQLRRFKELTREDLAEGL RAAVAEKKTK
experiment.sample.molecule[1].mw30.9
experiment.sample.molecule[1].total_mw30.9
experiment.sample.molecule[1].number_molecules1
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_description
experiment.sample.buffer.name50mM Hepes 200mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph8.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameEccA5-N terminal domain and EspG5 complex of ESX-5 secretion pathway of Mycobacterium tuberculosis
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressIndia
experiment.contributor[0].affiliation[0].full_nameCSIR - Central Drug Research Institute
experiment.contributor[0].affiliation[0].webpagehttps://cdri.res.in/
experiment.contributor[0].contributor_nameRajlakshmi
experiment.contributor[0].contributor_surnameK
experiment.contributor[0].orcid
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2025-01-28
experiment.storage_temperature4.0
experiment.cell_temperature10.0
experiment.exposure_time900.0
experiment.number_of_frames4
experiment.wavelength0.154
experiment.sample_detector_distance0.317
experiment.concentration_minnull
experiment.concentration_max4.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.094
experiment.s_max6.001
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDWF7_fit1_model1_img.png
fits[0].models[0].softwareDAMMIF
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modeldummy
fits[0].models[0].software_versionDAMFILT 5.0 (r13837)
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fits[0].models[0].model_mw55.623
fits[0].models[0].bead_radius2.75
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fits[0].models[0].symmetrynull
fits[0].models[0].commentnull
fits[0].models[0].user1172
fits[0].fit_unit1/A
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fits[0].softwareDAMMIF
fits[0].chi_square_value0.026
fits[0].p_value0.0
fits[0].fit_residual_plotSASDWF7_fit1_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDWF7_fit1.fir
fits[0].fit_loghttps://www.sasbdb.org/media/fitting_files/log_files/G5NT_4MG_6HpEiT6.log
fits[0].software_versionnull
fits[0].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitarbitrary
experimental_mw53.15
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mw55.0
porod_mw_errornull
pddf_i066240.0
pddf_i0_errornull
guinier_i066692.4
guinier_i0_errornull
pddf_rg3.362
pddf_rg_errornull
guinier_rg3.319
guinier_rg_error0.398
pddf_dmax10.74
pddf_dmax_errornull
porod_volume84.25
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first5
guinier_point_last48
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDWF7_datloglog_img.png
symmetrynull
last_modified2026-02-22T17:39:35.038740+01:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDWF7
statussuccess
started_at2026-08-11T15:29:04.898896+00:00
finished_at2026-08-11T15:29:12.244489+00:00
source_last_modified2026-02-22T17:39:35.038740+01:00
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files[4].zip_validationcentral_directory_readable
查看完整 summary.json 原文
{
  "code": "SASDWF7",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "SAXS analysis of EccA5 N-terminal domain and EspG5 of ESX-5 secretion pathway of Mycobacterium tuberculosis",
    "publication": null,
    "status": "released",
    "submitted_date": "2025-02-12",
    "released_date": "2026-02-12"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDWF7.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDWF7.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWF7_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWF7_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDWF7_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWF7_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDWF7.sascif",
  "experiment": {
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      "detector": {
        "type": "Hybrid Photon Counting (HPC)",
        "name": "Mythen2 R 1K",
        "resolution": null
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      "city": "Lucknow",
      "country": "India",
      "beamline_name": "Anton Paar SAXSpace",
      "beam_geometry": null,
      "type_of_source": "X-ray in house",
      "point_source": null,
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}
查看完整 manifest.json 原文
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