2. Measurements Reported by SASBDB Reported Results
Metric
Method
Value
Uncertainty
Unit
dmax
P(r)
30.3
—
Å
i0
Guinier
0.837131
—
arbitrary
i0
P(r)
0.8172
0.006
arbitrary
mw
Experimental
263.0
—
kDa
mw
Porod
390.0
—
kDa
porod_volume
Porod
625.0
—
ų
rg
Guinier
7.148
0.84
Å
rg
P(r)
7.672
0.1
Å
These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.
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3. Source Fits and Models Source Fits & Models
This entry has no source fit record.
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4. Source File Index Source Files
Category
Path
Download status
Size
curve
sasbdb/entries/g3/sasdwg3/source/SASDWG3.dat
downloaded
81993
full_entry_zip
sasbdb/entries/g3/sasdwg3/source/SASDWG3.zip
downloaded
66397
pddf
sasbdb/entries/g3/sasdwg3/source/SASDWG3.out
downloaded
140606
sascif
sasbdb/entries/g3/sasdwg3/source/SASDWG3.sascif
not_available
—
summary
sasbdb/entries/g3/sasdwg3/source/summary.json
downloaded
7036
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5. Experiment Description and Publication Experiment & Publication
Original Experiment Description
Synchrotron SAXS data from solutions of MBP-tagged CpoS C-ter in 20 mM Tris-HCl pH 7.5, 50 mM NaCl, 1mM EDTA, 2% glycerol and 1 mM DTT were collected on the BioCAT 18-ID-D beamline at the Advanced Photon Source (APS), Argonne National Laboratory storage ring (Lemont, IL, USA) using a Eiger2 XE 9M detector at a sample-detector distance of ~3.7 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC)-SAXS was employed. The SEC parameters were as follows: A 250 μl sample at 1 mg/ml was injected at a 0.60 ml/min flow rate onto a Superose 6 Increase GL 10/300 column (GE healthcare) at 22°C. 2500 successive frames (0.3 second exposure time per second period) were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; An average of 30 frames before and after the eluted peaks were used for buffer subtraction. Protein peaks were also ran through evolving factor analysis (EFA) to deconvolute into the individual scattering components.
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6. Complete Source Record Complete Source Record
The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
The CpoS C-terminal domain construct used for SAS is fused to maltose binding protein at the N-terminus, with an intervening amino acid linker (NSSSNNNNNNNNNNLGENLYFQGSHMSMGGR).
experiment.sample.buffer.name
20 mM Tris-HCl, 50 mM NaCl, 1 mM EDTA, 2% glycerol, 1 mM DTT
experiment.sample.buffer.concentration_unit
null
experiment.sample.buffer.comment
null
experiment.sample.buffer.additive
null
experiment.sample.buffer.concentration
null
experiment.sample.buffer.pka
null
experiment.sample.buffer.ph
7.5
experiment.sample.buffer.deuteration
null
experiment.sample.purity_method
null
experiment.sample.name
MBP-tagged C-terminal domain of CpoS (Candidate inclusion membrane protein)
Synchrotron SAXS data from solutions of MBP-tagged CpoS C-ter in 20 mM Tris-HCl pH 7.5, 50 mM NaCl, 1mM EDTA, 2% glycerol and 1 mM DTT were collected on the BioCAT 18-ID-D beamline at the Advanced Photon Source (APS), Argonne National Laboratory storage ring (Lemont, IL, USA) using a Eiger2 XE 9M detector at a sample-detector distance of ~3.7 m and at a wavelength of λ = 0.1033 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC)-SAXS was employed. The SEC parameters were as follows: A 250 μl sample at 1 mg/ml was injected at a 0.60 ml/min flow rate onto a Superose 6 Increase GL 10/300 column (GE healthcare) at 22°C. 2500 successive frames (0.3 second exposure time per second period) were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; An average of 30 frames before and after the eluted peaks were used for buffer subtraction. Protein peaks were also ran through evolving factor analysis (EFA) to deconvolute into the individual scattering components.
