G S H M S T G L F P K S V S L S I D N S K G D A K N I F E E K I L K K L G K S S K E A I T Y N Q T M I S M P V S Q S S E L N I T S K N V K H V D I T K T G F M Y L I T Q N D F R R L G H Q L P K L K D N Q V A Y F V Q K G D S R L K K I N L L G N K F D V V K N L K E A Y V P E T T N T Y N P G L I I F A N N K Q I D N I R K A Y L P Y T K N I N T F P K T F K A Y L D L N S Q E I N S I S K N D I I E V D G K Y V G N I S T
experiment.sample.molecule[0].organism
Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)
{
"code": "SASDWZ6",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "The extracellular domain of SaNSrFP binds bacitracin and allows the identification of new members of the BceAB transporter family",
"publication": {
"title": "The extracellular domain of SaNSrFP binds bacitracin and allows the identification of new members of the BceAB transporter family",
"author_list": "Mammen C, Gottstein J, Cea P, Tantsur K, Reiners J, Bonus M, Gohlke H, Smits S",
"journal": "Frontiers in Microbiology",
"doi": "10.3389/fmicb.2025.1662803",
"pmid": null,
"published_date": "2025 Sep 17"
},
"status": "released",
"submitted_date": "2025-02-04",
"released_date": "2025-09-01"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDWZ6.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDWZ6.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWZ6_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWZ6_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDWZ6_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDWZ6_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDWZ6.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus3 2M",
"resolution": 0.172
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "point",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "ABC transporter, permease protein, extracellular domain",
"short_name": "SaNsrP ECD",
"sequence": "G S H M S T G L F P K S V S L S I D N S K G D A K N I F E E K I L K K L G K S S K E A I T Y N Q T M I S M P V S Q S S E L N I T S K N V K H V D I T K T G F M Y L I T Q N D F R R L G H Q L P K L K D N Q V A Y F V Q K G D S R L K K I N L L G N K F D V V K N L K E A Y V P E T T N T Y N P G L I I F A N N K Q I D N I R K A Y L P Y T K N I N T F P K T F K A Y L D L N S Q E I N S I S K N D I I E V D G K Y V G N I S T",
"organism": "Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R)",
"uniprot_code": "Q8DZX0",
"uniprot_range_first": 311,
"uniprot_range_last": 412,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MFYLKIAWHNLKHSIDQYIPFLLASLLLYSLTCSTLLILMSAVGRDMGTAATVLFLGVIV\nLSIFAVVMEHYSYNILMKQRSSEFGLYNILGMNKRQVARVASLELFIIYIFLISIGSLFS\nAFFAKFIYLIFVNIINYHALNLSLSLWPFIICIVIFTGIFLTLEVPVIRHVHLSSPLSLF\nRKKQQGEKEPKGNLILAILALVAIAIAYTMALTSGKAPALAVIYRFFFAVLLVIAGTYLF\nYISFMTWYLKRLRQNKHYYYKSEHFVSTSQMIFRMKQNAVGLASITLLAVMALVTIATTV\nSLYSNTQNVVTGLFPKSVSLSIDNSKGDAKNIFEEKILKKLGKSSKEAITYNQTMISMPV\nSQSSELNITSKNVKHVDITKTGFMYLITQNDFRRLGHQLPKLKDNQVAYFVQKGDSRLKK\nINLLGNKFDVVKNLKEAYVPETTNTYNPGLIIFANNKQIDNIRKAYLPYTKNINTFPKTF\nKAYLDLNSQEINSISKNDIIEVDGKYVGNISTKQSFLKEGYQMFGGLLFTGFLLGISFLL\nGIALIVYYKQYSEGHEDKRSYRILQEVGMSKKLVKRTINSQIMIFFFQPLVVAVIHFGVA\nIPMLKQMLLVFGVLNSTIVYVVSGLTVLAISIIYFIIYRITSRTYYHIIER",
"mw": 23.377,
"total_mw": 23.377,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": "extracellular domain (ECD) from the ABC transporter permease protein"
}
],
"buffer": {
"name": "25 mM MES, 500 mM NaCl",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 6.0,
"deuteration": null
},
"purity_method": null,
"name": "ABC transporter permease protein extracellular domain from S.agalactiae (SaNsrP ECD)",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Düsseldorf, Germany",
"full_name": "Heinrich Heine University Düsseldorf",
"webpage": "https://www.uni-duesseldorf.de"
}
],
"contributor_name": "Jens",
"contributor_surname": "Reiners",
"orcid": ""
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2020-12-03",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 1.0,
"number_of_frames": 10,
"wavelength": 0.099,
"sample_detector_distance": 2.813,
"concentration_min": null,
"concentration_max": 1.65,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.134,
"s_max": 4.187,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "5.0",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": "arbitrary",
"experimental_mw": 24.92,
"experimental_mw_error": null,
"guinier_i0_mw": 22.94,
"guinier_i0_mw_error": null,
"porod_mw": 23.0,
"porod_mw_error": null,
"pddf_i0": 23.01,
"pddf_i0_error": 0.06,
"guinier_i0": 22.9415,
"guinier_i0_error": null,
"pddf_rg": 2.496,
"pddf_rg_error": 0.01,
"guinier_rg": 2.43,
"guinier_rg_error": 0.06,
"pddf_dmax": 9.0,
"pddf_dmax_error": null,
"porod_volume": 50.17,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 77,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDWZ6_datloglog_img.png",
"symmetry": null,
"last_modified": "2025-09-17T10:18:55.278059+02:00",
"bragg_peak": []
}
