Apical stem loop of stem loop 2 motif in Delta variant of SARS-CoV-2 (s2m Delta_short)
Data type: SASBDB experimental dataStatus: PublishedCurve type: Single concentrationLast updated: 2025-07-21T18:28:38.186112+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment
Sample 1 · Apical stem loop of stem loop 2 motif in Delta variant of SARS-CoV-2 (s2m Delta_short)
Concentration
— – 2.5
Buffer / pH
50 mM Bis-Tris, 25 mM NaCl / 6.4
Experimental temperature
25.0
Facility / beamline
PETRA III / EMBL P12
Wavelength
0.12398 nm
Exposure
0.095 s × 33
Molecular Components
Component
Type / organism
UniProt and Construct
Oligomeric State
Molecular weight
apical stem loop of stem loop 2 motif (s2m) in Delta variant of SARS-CoV-2View sequence
>S2MDELTA_SHORT25BPGGCACUCGGAGUACGAUCGAGUGCC
RNASARS-Coronavirus-2 Delta
——–—
monomerMolecule count 1
8.132 kDa
Experimental Curves
Curve
Points / columns
q range
Uncertainty quality
Negative-intensity points
Source file
1
2617[3]
0.0223001–7.31442 1/nm
Has uncertainty columnMissing 0
0
sasbdb/entries/b3/sasdxb3/source/SASDXB3.dat
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2. Measurements Reported by SASBDB Reported Results
Metric
Method
Value
Uncertainty
Unit
i0
Guinier
0.0418526
—
arbitrary
mw
Experimental
7.3
—
kDa
rg
Guinier
1.39
0.01
nm
These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.
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3. Source Fits and Models Source Fits & Models
This entry has no source fit record.
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4. Source File Index Source Files
Category
Path
Download status
Size
curve
sasbdb/entries/b3/sasdxb3/source/SASDXB3.dat
downloaded
119896
full_entry_zip
sasbdb/entries/b3/sasdxb3/source/SASDXB3.zip
downloaded
32844
pddf
sasbdb/entries/b3/sasdxb3/source/SASDXB3.out
not_listed
—
sascif
sasbdb/entries/b3/sasdxb3/source/SASDXB3.sascif
not_available
—
summary
sasbdb/entries/b3/sasdxb3/source/summary.json
downloaded
5511
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5. Experiment Description and Publication Experiment & Publication
Related Publication
Title
Structural heterogeneity and dynamics in the apical stem loop of s2m from SARS-CoV-2 Delta by an integrative NMR spectroscopy and MD simulation approach.
Authors
Wirtz Martin MA, Makowski JA, Matzel T, Kensinger AH, Herr A, Richter C, Jonker HRA, Wacker A, Evanseck JD, Schwalbe H
DOI / PMID
10.1093/nar/gkaf552 / 40586311
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6. Complete Source Record Complete Source Record
The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
summary.json:134 field values
Field path
Raw value
code
SASDXB3
status
Published
type_of_curve
Single concentration
angular_unit
1/nm
project.title
Structural heterogeneity and dynamics in the apical stem loop of s2m from SARS-CoV-2 Delta by an integrative NMR spectroscopy and MD simulation approach.
project.publication.title
Structural heterogeneity and dynamics in the apical stem loop of s2m from SARS-CoV-2 Delta by an integrative NMR spectroscopy and MD simulation approach.
project.publication.author_list
Wirtz Martin MA, Makowski JA, Matzel T, Kensinger AH, Herr A, Richter C, Jonker HRA, Wacker A, Evanseck JD, Schwalbe H