Probable conserved Mce associated membrane protein (Mam1Adelta106) from M.tuberculosis

{
  "code": "SASDXF2",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "Insight into the structure and interactions of the <i>M. tuberculosis</i>\n            Mce-associated membrane proteins Mam1A-1D",
    "publication": {
      "title": "Insight into the structure and interactions of the <i>M. tuberculosis</i>\n            Mce-associated membrane proteins Mam1A-1D",
      "author_list": "Hynönen M, Perumal P, Hynönen N, Doutch J, Ma K, Venkatesan R",
      "journal": null,
      "doi": "10.1101/2025.03.26.645568",
      "pmid": null,
      "published_date": "2025 Mar 26"
    },
    "status": "released",
    "submitted_date": "2025-03-26",
    "released_date": "2025-04-11"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDXF2.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDXF2.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF2_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF2_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDXF2_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDXF2_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDXF2.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Eiger 4M",
        "resolution": 75.0
      },
      "name": "Diamond Light Source",
      "city": "Didcot",
      "country": "UK",
      "beamline_name": "B21",
      "beam_geometry": null,
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Probable conserved Mce associated membrane protein",
          "short_name": "Mam1A delta 106",
          "sequence": "MKHHHHHHPMSDYDIPTTENLYFQGAMAPDAGAMSASMQKIIECGTGDFGAQASLYTSMLVEAYQAASVHVQVTDMRAAVERNNNDGSVDVLVALRVKVSNTDSDAHEVGYRLRVRMALDEGRYKIAKLDQVTK",
          "organism": "Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)",
          "uniprot_code": "O07419",
          "uniprot_range_first": 107,
          "uniprot_range_last": 213,
          "oligomerization": "tetramer",
          "molecular_type": "protein",
          "uniprot_sequence": "MKAADSAESDAGADQTGPQVKAADSAESDAGELGEDACPEQALVERRPSRLRRGWLVGIA\nATLLALAGGLGAAGYFALRSHQESQSIAREDLAAIEAAKDCVAATQAPDAGAMSASMQKI\nIECGTGDFGAQASLYTSMLVEAYQAASVHVQVTDMRAAVERNNNDGSVDVLVALRVKVSN\nTDSDAHEVGYRLRVRMALDEGRYKIAKLDQVTK",
          "mw": 14.807,
          "total_mw": 59.228,
          "number_molecules": 4,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": "Mam1A/Rv0175 delta 106 is N-terminally truncated construct which lacks the alpha1-helix. Protein, despite the removal of TM-helix, is not soluble and required C12E9 detergent to be solubilized. Tetrameric form was calculated with SEC-MALS."
        }
      ],
      "buffer": {
        "name": "50mM Tris, 500mM NaCl",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 8.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Probable conserved Mce associated membrane protein (Mam1Adelta106) from M.tuberculosis",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": null,
            "full_name": "University of Helsinki",
            "webpage": null
          }
        ],
        "contributor_name": "Mikko",
        "contributor_surname": "Hynönen",
        "orcid": "https://orcid.org/0000-0003-2431-8892"
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2019-12-08",
    "storage_temperature": 15.0,
    "cell_temperature": 15.0,
    "exposure_time": 3.0,
    "number_of_frames": 600,
    "wavelength": 0.09464,
    "sample_detector_distance": 3.7329,
    "concentration_min": null,
    "concentration_max": 8.8,
    "sample_volume": 35.0,
    "flow_rate": 0.07,
    "s_min": 0.026,
    "s_max": 3.4,
    "total_exposure_time": null,
    "seccolumn": 14
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDXF2_fit1_model1_img.png",
          "software": "AlphaFold",
          "pdb_link": [],
          "model_title": "1A_107_Main_Model_Tetra_SASDXF2",
          "type_of_model": "dummy",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDXF2_fit1_model1.pdb",
          "model_mw": null,
          "bead_radius": 1.9,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1328
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDXF2_fit1_fixed_fit_img.png",
      "software": "FoXS",
      "chi_square_value": 31.206491,
      "p_value": 0.0,
      "fit_residual_plot": "SASDXF2_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDXF2_fit1.fit",
      "fit_log": null,
      "software_version": null,
      "description": ""
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": "The truncated version of the data is provided as an additional file.",
  "experiment_description": null,
  "tags": [],
  "intensity_unit": "1/cm",
  "experimental_mw": 39.4,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 56.0,
  "porod_mw_error": null,
  "pddf_i0": 0.03975,
  "pddf_i0_error": null,
  "guinier_i0": 0.0401827,
  "guinier_i0_error": null,
  "pddf_rg": 3.22,
  "pddf_rg_error": null,
  "guinier_rg": 3.22,
  "guinier_rg_error": 0.086,
  "pddf_dmax": 9.0,
  "pddf_dmax_error": null,
  "porod_volume": 177.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 41,
  "guinier_point_last": 275,
  "pddf_point_first": 29,
  "pddf_point_last": 841,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDXF2_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2026-05-21T15:22:41.639400+02:00",
  "bragg_peak": []
}

{
  "code": "SASDXF2",
  "status": "success",
  "started_at": "2026-08-11T13:37:54.742315+00:00",
  "finished_at": "2026-08-11T13:38:03.442477+00:00",
  "source_last_modified": "2026-05-21T15:22:41.639400+02:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDXF2/",
      "path": "/data/saxsdb/sasbdb/entries/f2/sasdxf2/source/summary.json",
      "size": 7023,
      "sha256": "e729068dceb9d163e5f2db1d1cf08874457fbce835292b3626fcfea1d308b042"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDXF2.dat",
      "path": "/data/saxsdb/sasbdb/entries/f2/sasdxf2/source/SASDXF2.dat",
      "size": 103784,
      "sha256": "95594d2fac1a129f2f6b63ebc68eca45707fb0bc18d613a9ec078c25ee575760",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDXF2.out",
      "path": "/data/saxsdb/sasbdb/entries/f2/sasdxf2/source/SASDXF2.out",
      "size": 150218,
      "sha256": "1e5f3f4b563d89bc7bf00f89a9f41b3017e787a73d82e761b8ccc49f2ef6d422",
      "role": "pddf"
    },
    {
      "status": "not_available",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDXF2.sascif",
      "path": "/data/saxsdb/sasbdb/entries/f2/sasdxf2/source/SASDXF2.sascif",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDXF2.zip",
      "path": "/data/saxsdb/sasbdb/entries/f2/sasdxf2/source/SASDXF2.zip",
      "size": 181440,
      "sha256": "e1798ba18ab18aef9add9926f8cf9cdbee298adec79d2ef06275a230d19ba4e9",
      "role": "full_entry_zip",
      "zip_member_count": 6,
      "zip_validation": "central_directory_readable"
    }
  ]
}