查看完整 summary.json 原文
{
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"title": "Structural Modeling and Dynamics of the Full-Length Homer1 Multimer.",
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"title": "Structural Modeling and Dynamics of the Full-Length Homer1 Multimer.",
"author_list": "Kálmán ZE, Czajlik A, Maruzs B, Farkas F, Pap I, Homonnay C, Klumpler T, Batta G, Gáspári Z, Péterfia B",
"journal": "Proteins",
"doi": "10.1002/prot.70091",
"pmid": "41267651",
"published_date": "2025 Nov 21"
},
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"symmetry": null,
"last_modified": "2025-11-26T14:17:40.425313+01:00",
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}
查看完整 manifest.json 原文
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