SASDY43

Bovine serum albumin (BSA) at neutral pH

数据类型:SASBDB 实验数据 状态:Published 曲线类型:SEC-SAS 最后更新:2025-12-28T19:42:12.230562+01:00

Synchrotron SAXS data from solutions of BSA in 10 mM PBS,138 mM NaCl, pH 7.25 were collected on the 4C beamline at the Pohang Accelerator Laboratory storage ring (Pohang, South Korea) using an EIGER2 X 4M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.0734 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAXS was employed. The SEC parameters were as follows: A 100.00 μl sample at 10 mg/ml was injected at a 0.1 ml/min flow rate onto a Cytiva Superdex 200 Increase 3.2/300 column at 25°C. SAXS data were collected continuously over 45 min at a flow rate of 0.1 mL/min with a 5 s integration time per frame, yielding 338 frames per run. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Bovine serum albumin (BSA) at neutral pH

浓度— – 10.0 缓冲液 / pH10 mM PBS, 138 mM NaCl / 7.25
实验温度25.0 设备 / 束线Pohang Accelerator Laboratory / 4C
波长0.0734 nm曝光5.0 s × 338

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Bovine serum albumin
查看序列
DTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLTSSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVVSTQTALA
proteinBos taurusP0276925–607monomer分子数 166.5 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1817[3]0.0108991–0.340093 1/A含误差列缺失 00sasbdb/entries/43/sasdy43/source/SASDY43.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)8.0Å
i0Guinier18.6396arbitrary
i0P(r)18.72arbitrary
mwExperimental66.5kDa
porod_volumePorod98.3ų
rgGuinier2.7360.055Å
rgP(r)2.720.082Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称10 mM PBS, 138 mM NaCl缓冲液浓度
pH7.25添加剂
缓冲液说明
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2024-03-05储存 / 测量温度4.0 / 25.0
曝光时间5.0帧数338
波长0.0734样品-探测器距离3.0
光源X-ray synchrotron探测器Dectris / EIGER2 X 4M
机构 / 束线Pohang Accelerator Laboratory / 4C · Pohang, South Korea
q 范围0.109 – 3.401样品体积 / 流速100.0 / 0.1

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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sascifsasbdb/entries/43/sasdy43/source/SASDY43.sascifnot_available下载查看原文件源站
summarysasbdb/entries/43/sasdy43/source/summary.jsondownloaded810510514a98b4b0f07401fbc25389ebca05c3ebfae23abc3b117ae4c6842b338aa8下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:150 个字段值
字段路径原始值
codeSASDY43
statusPublished
type_of_curveSEC-SAS
angular_unit1/A
project.titleStructural Characterization of Urea-Induced BSA Denaturation Using Size-Exclusion Chromatography Coupled with Small-Angle X-ray Scattering.
project.publication.titleStructural Characterization of Urea-Induced BSA Denaturation Using Size-Exclusion Chromatography Coupled with Small-Angle X-ray Scattering.
project.publication.author_listMaliki SK, Kim JH, Chung M, Jin KS
project.publication.journalJ Phys Chem B
project.publication.doi10.1021/acs.jpcb.5c06275
project.publication.pmid41446988
project.publication.published_date2025 Dec 25
project.statusreleased
project.submitted_date2025-12-11
project.released_date2025-12-28
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experiment.instrument.detector.nameDectris / EIGER2 X 4M
experiment.instrument.detector.resolution0.075
experiment.instrument.namePohang Accelerator Laboratory
experiment.instrument.cityPohang
experiment.instrument.countrySouth Korea
experiment.instrument.beamline_name4C
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameBovine serum albumin
experiment.sample.molecule[0].short_nameBSA
experiment.sample.molecule[0].sequenceDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASL RETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKY NGVFQECCQAEDKGACLLPKIETMREKVLTSSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKV HKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQE AKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEY GFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESL VNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAA DDKEACFAVEGPKLVVSTQTALA
experiment.sample.molecule[0].organismBos taurus
experiment.sample.molecule[0].uniprot_codeP02769
experiment.sample.molecule[0].uniprot_range_first25
experiment.sample.molecule[0].uniprot_range_last607
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPF DEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEP ERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYY ANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVA RLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKE CCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRR HPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEK LGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLIL NRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLP DTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVV STQTALA
experiment.sample.molecule[0].mw66.5
experiment.sample.molecule[0].total_mw66.5
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_description
experiment.sample.buffer.name10 mM PBS, 138 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.25
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameBovine serum albumin (BSA) at neutral pH
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[]
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2024-03-05
experiment.storage_temperature4.0
experiment.cell_temperature25.0
experiment.exposure_time5.0
experiment.number_of_frames338
experiment.wavelength0.0734
experiment.sample_detector_distance3.0
experiment.concentration_minnull
experiment.concentration_max10.0
experiment.sample_volume100.0
experiment.flow_rate0.1
experiment.s_min0.109
experiment.s_max3.401
experiment.total_exposure_timenull
experiment.seccolumn48
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fits[0].models[0].softwareGASBOR
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modeldummy
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fits[0].models[0].user120
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fits[0].chi_square_value0.03
fits[0].p_value0.0
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fits[0].software_versionnull
fits[0].description
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_version5.0
i0_calibration_standardnull
descriptionSynchrotron SAXS data from solutions of BSA in 10 mM PBS,138 mM NaCl, pH 7.25 were collected on the 4C beamline at the Pohang Accelerator Laboratory storage ring (Pohang, South Korea) using an EIGER2 X 4M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.0734 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAXS was employed. The SEC parameters were as follows: A 100.00 μl sample at 10 mg/ml was injected at a 0.1 ml/min flow rate onto a Cytiva Superdex 200 Increase 3.2/300 column at 25°C. SAXS data were collected continuously over 45 min at a flow rate of 0.1 mL/min with a 5 s integration time per frame, yielding 338 frames per run. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.
experiment_description-
tags[]
intensity_unitarbitrary
experimental_mw66.5
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i018.72
pddf_i0_errornull
guinier_i018.6396
guinier_i0_errornull
pddf_rg2.72
pddf_rg_error0.082
guinier_rg2.736
guinier_rg_error0.055
pddf_dmax8.0
pddf_dmax_errornull
porod_volume98.3
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first30
guinier_point_last68
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDY43_datloglog_img.png
symmetrynull
last_modified2025-12-28T19:42:12.230562+01:00
bragg_peak[]
manifest.json:34 个字段值
字段路径原始值
codeSASDY43
statussuccess
started_at2026-08-11T13:52:32.194960+00:00
finished_at2026-08-11T13:52:39.941071+00:00
source_last_modified2025-12-28T19:42:12.230562+01:00
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查看完整 summary.json 原文
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  "code": "SASDY43",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/A",
  "project": {
    "title": "Structural Characterization of Urea-Induced BSA Denaturation Using Size-Exclusion Chromatography Coupled with Small-Angle X-ray Scattering.",
    "publication": {
      "title": "Structural Characterization of Urea-Induced BSA Denaturation Using Size-Exclusion Chromatography Coupled with Small-Angle X-ray Scattering.",
      "author_list": "Maliki SK, Kim JH, Chung M, Jin KS",
      "journal": "J Phys Chem B",
      "doi": "10.1021/acs.jpcb.5c06275",
      "pmid": "41446988",
      "published_date": "2025 Dec 25"
    },
    "status": "released",
    "submitted_date": "2025-12-11",
    "released_date": "2025-12-28"
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          "organism": "Bos taurus",
          "uniprot_code": "P02769",
          "uniprot_range_first": 25,
          "uniprot_range_last": 607,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPF\nDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEP\nERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYY\nANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVA\nRLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKE\nCCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRR\nHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEK\nLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLIL\nNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLP\nDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVV\nSTQTALA",
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          "total_mw": 66.5,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
        }
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      "buffer": {
        "name": "10 mM PBS, 138 mM NaCl",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.25,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Bovine serum albumin (BSA) at neutral pH",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2024-03-05",
    "storage_temperature": 4.0,
    "cell_temperature": 25.0,
    "exposure_time": 5.0,
    "number_of_frames": 338,
    "wavelength": 0.0734,
    "sample_detector_distance": 3.0,
    "concentration_min": null,
    "concentration_max": 10.0,
    "sample_volume": 100.0,
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    "s_min": 0.109,
    "s_max": 3.401,
    "total_exposure_time": null,
    "seccolumn": 48
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    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDY43_fit1_model1_img.png",
          "software": "GASBOR",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": null,
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDY43_fit1_model1.cif",
          "model_mw": null,
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          "symmetry": "P1",
          "comment": null,
          "user": 120
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      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDY43_fit1_fixed_fit_img.png",
      "software": "GASBOR",
      "chi_square_value": 0.03,
      "p_value": 0.0,
      "fit_residual_plot": "SASDY43_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDY43_fit1.fir",
      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/15_9HNfrHt.log",
      "software_version": null,
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  "description": "Synchrotron SAXS data from solutions of BSA in 10 mM PBS,138 mM NaCl, pH 7.25 were collected on the 4C beamline at the Pohang Accelerator Laboratory storage ring (Pohang, South Korea) using an EIGER2 X 4M detector at a sample-detector distance of 3 m and at a wavelength of λ = 0.0734 nm (I(s) vs s, where s = 4πsinθ/λ, and 2θ is the scattering angle). In-line size-exclusion chromatography (SEC) SAXS was employed. The SEC parameters were as follows: A 100.00 μl sample at 10 mg/ml was injected at a 0.1 ml/min flow rate onto a Cytiva Superdex 200 Increase 3.2/300 column at 25°C. SAXS data were collected continuously over 45 min at a flow rate of 0.1 mL/min with a 5 s integration time per frame, yielding 338 frames per run. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
  "experiment_description": "-",
  "tags": [],
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  "guinier_i0_mw_error": null,
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  "porod_mw_error": null,
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  "guinier_i0": 18.6396,
  "guinier_i0_error": null,
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  "porod_volume_error": null,
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  "guinier_point_first": 30,
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  "pddf_point_first": null,
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  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDY43_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2025-12-28T19:42:12.230562+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
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  "finished_at": "2026-08-11T13:52:39.941071+00:00",
  "source_last_modified": "2025-12-28T19:42:12.230562+01:00",
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