← Back to search

1a8b

RAT ANNEXIN V COMPLEXED WITH GLYCEROPHOSPHOETHANOLAMINE

Method: X-RAY DIFFRACTION D_max: 77.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1a8b
deposition_date	1998-03-23
title	RAT ANNEXIN V COMPLEXED WITH GLYCEROPHOSPHOETHANOLAMINE
keywords	PHOSPHOLIPID ANALOG, CALCIUM BINDING PROTEIN, MEMBRANE BINDING PROTEIN; CALCIUM BINDING PROTEIN
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	22.77 Å
rg_electron	21.88 Å
i0	22683700.00
molecular_weight	36199.0 kDa
excluded_volume	45276 Å³
envelope_volume	53140 Å³
shell_volume	21162 Å³
envelope_diameter	78.0 Å
shell_rg	27.92 Å
envelope_rg	22.05 Å
shape_rg	21.85 Å
total_rg	22.75 Å
total_atoms	2526
n_residues	318
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	77.4 Å
rg_real	22.81 Å
rg_real_error	0.55 Å
i0_real	2.2680e+07
i0_real_error	3.2110e+05
rg_reciprocal	22.80 Å
i0_reciprocal	22680000.0000
total_estimate	0.8719
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	25.8 Å
skewness	0.449
kurtosis	-0.101
angular_range	— – 0.3500 Å⁻¹
current_alpha	0.0000
highest_alpha	5134000.0000
n_real_points	67
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.787; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.993

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	ANNEXIN V
formula_weight	35683.3 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2681

XALRGTVTDFSGFDGRADAEVLRKAMKGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRDLVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDPDTAIDDAQVELDAQALFQAGELKWGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLENLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD

Entity 2 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	10

Entity 3 non-polymer

description	L-ALPHA-GLYCEROPHOSPHORYLETHANOLAMINE
formula_weight	215.1 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	155

▶

6. Citations (1)

▶

length_a	157.470 Å
length_b	157.470 Å
length_c	37.440 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	9

space_group	H 3
int_tables_number	146
crystal_system	—

resolution	1.900 Å
resolution_low	10.000 Å
r_factor	0.2000
r_work	0.2000
r_free	—

fit	/app/data/saxs_computation/a8/1a8b/1a8b.fit
pddf	/app/data/pr_computation/a8/1a8b/1a8b.pr.out
profile	/app/data/saxs_computation/a8/1a8b/1a8b.dat

RAT ANNEXIN V COMPLEXED WITH GLYCEROPHOSPHOETHANOLAMINE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction