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1apy

HUMAN ASPARTYLGLUCOSAMINIDASE

Method: X-RAY DIFFRACTION D_max: 79.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1apy
deposition_date	1995-06-14
title	HUMAN ASPARTYLGLUCOSAMINIDASE
keywords	ASPARTYLGLUCOSAMINIDASE, GLYCOSYLASPARAGINASE, HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	24.31 Å
rg_electron	23.20 Å
i0	75292500.00
molecular_weight	65691.0 kDa
excluded_volume	81222 Å³
envelope_volume	92299 Å³
shell_volume	31723 Å³
envelope_diameter	78.2 Å
shell_rg	31.66 Å
envelope_rg	23.57 Å
shape_rg	23.19 Å
total_rg	24.08 Å
total_atoms	4601
n_residues	604
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	79.0 Å
rg_real	24.13 Å
rg_real_error	0.46 Å
i0_real	7.5290e+07
i0_real_error	1.0040e+06
rg_reciprocal	24.17 Å
i0_reciprocal	75290000.0000
total_estimate	0.8868
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	31.4 Å
skewness	0.130
kurtosis	-0.465
angular_range	— – 0.3250 Å⁻¹
current_alpha	0.0000
highest_alpha	13780000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.842; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.998

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	ASPARTYLGLUCOSAMINIDASE
formula_weight	17293.3 kDa
ec_number	3.5.1.26
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	4838

SSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQPNYWRNVIPDPSKYCGPYKPP

Entity 2 polymer

description	ASPARTYLGLUCOSAMINIDASE
formula_weight	15085.1 kDa
ec_number	3.5.1.26
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,D

TIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI

Entity 3 branched

description	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	586.5 kDa
src_method	man
entity_count	1

Entity 4 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	man
entity_count	3

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	237

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6. Citations (2)

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length_a	98.400 Å
length_b	98.400 Å
length_c	134.500 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 61
int_tables_number	169
crystal_system	—

resolution	2.000 Å
resolution_low	8.000 Å
r_factor	0.1690
r_work	0.1690
r_free	0.2240

fit	/app/data/saxs_computation/ap/1apy/1apy.fit
pddf	/app/data/pr_computation/ap/1apy/1apy.pr.out
profile	/app/data/saxs_computation/ap/1apy/1apy.dat

HUMAN ASPARTYLGLUCOSAMINIDASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 branched

Entity 4 non-polymer

Entity 5 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)