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1apz

HUMAN ASPARTYLGLUCOSAMINIDASE COMPLEX WITH REACTION PRODUCT

Method: X-RAY DIFFRACTION D_max: 75.9 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1apz
deposition_date	1995-06-14
title	HUMAN ASPARTYLGLUCOSAMINIDASE COMPLEX WITH REACTION PRODUCT
keywords	ASPARTYLGLUCOSAMINIDASE, GLYCOSYLASPARAGINASE, COMPLEX (HYDROLASE-PEPTIDE), COMPLEX (HYDROLASE-PEPTIDE) complex; COMPLEX (HYDROLASE/PEPTIDE)
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	24.23 Å
rg_electron	23.17 Å
i0	75855500.00
molecular_weight	65955.0 kDa
excluded_volume	81493 Å³
envelope_volume	91742 Å³
shell_volume	31603 Å³
envelope_diameter	77.0 Å
shell_rg	31.60 Å
envelope_rg	23.51 Å
shape_rg	23.16 Å
total_rg	24.03 Å
total_atoms	4619
n_residues	604
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	75.9 Å
rg_real	24.05 Å
rg_real_error	0.38 Å
i0_real	7.5860e+07
i0_real_error	9.5220e+05
rg_reciprocal	24.09 Å
i0_reciprocal	75860000.0000
total_estimate	0.6905
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	30.8 Å
skewness	0.132
kurtosis	-0.471
angular_range	— – 0.3300 Å⁻¹
current_alpha	0.0000
highest_alpha	13500000.0000
n_real_points	65
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.895; Stabil: 1.000; Sysdev: 0.101; Positv: 1.000; Valcen: 0.989; Smooth: 0.995

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	ASPARTYLGLUCOSAMINIDASE
formula_weight	17293.3 kDa
ec_number	3.5.1.26
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	4759

SSPLPLVVNTWPFKNATEAAWRALASGGSALDAVESGCAMCEREQCDGSVGFGGSPDELGETTLDAMIMDGTTMDVGAVGDLRRIKNAIGVARKVLEHTTHTLLVGESATTFAQSMGFINEDLSTSASQALHSDWLARNCQPNYWRNVIPDPSKYCGPYKPP

Entity 2 polymer

description	ASPARTYLGLUCOSAMINIDASE
formula_weight	15085.1 kDa
ec_number	3.5.1.26
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,D

TIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQFSFMVYNSEKNQPTEEKVDCI

Entity 3 branched

description	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	586.5 kDa
src_method	man
entity_count	1

Entity 4 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	man
entity_count	3

Entity 5 non-polymer

description	ASPARTIC ACID
formula_weight	133.1 kDa
src_method	syn
entity_count	2

Entity 6 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	140

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6. Citations (2)

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length_a	98.400 Å
length_b	98.400 Å
length_c	134.200 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 61
int_tables_number	169
crystal_system	—

resolution	2.300 Å
resolution_low	8.000 Å
r_factor	0.2120
r_work	0.2120
r_free	0.2910

fit	/app/data/saxs_computation/ap/1apz/1apz.fit
pddf	/app/data/pr_computation/ap/1apz/1apz.pr.out
profile	/app/data/saxs_computation/ap/1apz/1apz.dat

HUMAN ASPARTYLGLUCOSAMINIDASE COMPLEX WITH REACTION PRODUCT

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (6)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 branched

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)