NITRITE REDUCTASE
Alcaligenes faecalis
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein homooligomer Homooligomer Protein × 3 PDB declaration: trimeric(3) Consistent with protein copy count | Chain A; UniProt 34–376 Chain B; UniProt 34–376 Chain C; UniProt 34–376 | Not recorded | CU COPPER (II) ION × 6 | X-RAY DIFFRACTION X-ray crystallization conditions:pH 4.5;10% PEG4000, 0.1 SODIUM ACETATE PH 4.5 | Resolution 2.00 Å |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 1AQ8 | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1AS6 STRUCTURE OF NITRITE BOUND TO OXIDIZED ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE Deposited 1997-08-13 | Different ligand/ion Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
34–376(343 aa)
Chain B
34–376(343 aa)
Chain C
34–376(343 aa)
|
Not recorded | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;10% PEG4000, 0.1 SODIUM ACETATE PH 4.5
|
Resolution 1.80 Å |
| 1AS7 STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE Deposited 1997-08-13 | Parsed fields agree | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
34–376(343 aa)
Chain B
34–376(343 aa)
Chain C
34–376(343 aa)
|
Not recorded | CU COPPER (II) ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;10% PEG4000, 0.1 SODIUM ACETATE PH 4.5
|
Resolution 2.00 Å |
| 1AS8 STRUCTURE OF NITRITE BOUND TO REDUCED ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE Deposited 1997-08-13 | Different ligand/ion Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
34–376(343 aa)
Chain B
34–376(343 aa)
Chain C
34–376(343 aa)
|
Not recorded | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 4.5;10% PEG4000, 0.1 SODIUM ACETATE PH 4.5
|
Resolution 1.85 Å |
| 1ET5 CRYSTAL STRUCTURE OF NITRITE REDUCTASE ASP98ASN MUTANT FROM ALCALIGENES FAECALIS S-6 Deposited 2000-04-12 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:40 - 376
|
Mutation:D98N | CU COPPER (II) ION × 6 ZN ZINC ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;298 K;sodium cacodylate, zinc acetate, PEG 4000, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
|
Resolution 1.90 Å R-free 0.214 |
| 1ET7 CRYSTAL STRUCTURE OF NITRITE REDUCTASE HIS255ASP MUTANT FROM ALCALIGENES FAECALIS S-6 Deposited 2000-04-12 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:40 - 376
|
Mutation:H255D | CU COPPER (II) ION × 6 CD CADMIUM ION × 9 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;298 K;PEG 6000 sodium cacodylate, cadmium acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
|
Resolution 1.70 Å R-free 0.210 |
| 1ET8 CRYSTAL STRUCTURE OF NITRITE REDUCTASE HIS255ASN MUTANT FROM ALCALIGENES FAECALIS Deposited 2000-04-12 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:40 - 376
|
Mutation:H255N | CU COPPER (II) ION × 6 ZN ZINC ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.7;298 K;PEG 8000, sodium cacodylate, zinc acetate, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
|
Resolution 1.80 Å R-free 0.212 |
| 1J9Q Crystal structure of nitrite soaked oxidized D98N AFNIR Deposited 2001-05-28 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:Residues 40-376
Chain B
40–376(337 aa)
Fragment:Residues 40-376
Chain C
40–376(337 aa)
Fragment:Residues 40-376
|
Mutation:D98N Mutation:D98N Mutation:D98N | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;PEG 6000, sodium acetate, sodium nitrite, copper chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.65 Å R-free 0.210 |
| 1J9R Crystal structure of nitrite soaked reduced D98N AFNIR Deposited 2001-05-28 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain B
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain C
40–376(337 aa)
Fragment:RESIDUES 40-376
|
Mutation:D98N Mutation:D98N Mutation:D98N | CU COPPER (II) ION × 9 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;PEG 6000, sodium acetate, sodium nitrite, copper chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.00 Å R-free 0.225 |
| 1J9S Crystal structure of nitrite soaked oxidized H255N AFNIR Deposited 2001-05-28 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain B
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain C
40–376(337 aa)
Fragment:RESIDUES 40-376
|
Mutation:H255N Mutation:H255N Mutation:H255N | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;PEG 6000, sodium acetate, copper chloride, sodium nitrite, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.90 Å R-free 0.204 |
| 1J9T Crystal structure of nitrite soaked reduced H255N AFNIR Deposited 2001-05-28 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain B
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain C
40–376(337 aa)
Fragment:RESIDUES 40-376
|
Mutation:H255N Mutation:H255N Mutation:H255N | CU COPPER (II) ION × 9 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.5;298 K;PEG 6000, sodium acetate, sodium nitrite, copper chloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.95 Å R-free 0.218 |
| 1L9O CRYSTAL STRUCTURE OF NITRITE SOAKED I257A VARIANT OF THE COPPER-CONTAINING NITRITE REDUCTASE FROM ALCALIGENES FAECALIS Deposited 2002-03-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain B
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain C
40–376(337 aa)
Fragment:RESIDUES 40-376
|
Mutation:I257A Mutation:I257A Mutation:I257A | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;sodium acetate peg 4000, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.70 Å R-free 0.192 |
| 1L9P CRYSTAL STRUCTURE OF NITRITE SOAKED I257G VARIANT OF THE COPPER-CONTAINING NITRITE REDUCTASE FROM ALCALIGENES FAECALIES S-6 Deposited 2002-03-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain B
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain C
40–376(337 aa)
Fragment:RESIDUES 40-376
|
Mutation:I257G Mutation:I257G Mutation:I257G | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;acetate peg 4000, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.75 Å R-free 0.194 |
| 1L9Q CRYSTAL STRUCTURE OF THE I257L VARIANT OF THE COPPER-CONTAINING NITRITE REDUCTASE FROM ALCALIGENES FAECALIS S-6 Deposited 2002-03-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain B
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain C
40–376(337 aa)
Fragment:RESIDUES 40-376
|
Mutation:I257L Mutation:I257L Mutation:I257L | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;acetate peg 4000, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.70 Å R-free 0.188 |
| 1L9R CRYSTAL STRUCTURE OF THE I257M VARIANT OF THE COPPER-CONTAINING NITRITE REDUCTASE FROM ALCALIGENES FAECALIS S-6 Deposited 2002-03-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain B
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain C
40–376(337 aa)
Fragment:RESIDUES 40-376
|
Mutation:I257M Mutation:I257M Mutation:I257M | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;acetate peg 4000, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.78 Å R-free 0.197 |
| 1L9S CRYSTAL STRUCTURE OF THE I257T VARIANT OF THE COPPER-CONTAINING NITRITE REDUCTASE FROM ALCALIGENES FAECALIS S-6 Deposited 2002-03-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain B
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain C
40–376(337 aa)
Fragment:RESIDUES 40-376
|
Mutation:I257T Mutation:I257T Mutation:I257T | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;acetate peg 4000, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.78 Å R-free 0.197 |
| 1L9T CRYSTAL STRUCTURE OF THE I257V VARIANT OF THE COPPER-CONTAINING NITRITE REDUCTASE FROM ALCALIGENES FAECALIS S-6 Deposited 2002-03-26 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain B
40–376(337 aa)
Fragment:RESIDUES 40-376
Chain C
40–376(337 aa)
Fragment:RESIDUES 40-376
|
Mutation:I257V Mutation:I257V Mutation:I257V | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;acetate peg 4000, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.75 Å R-free 0.208 |
| 1NPJ Crystal structure of H145A mutant of nitrite reductase from Alcaligenes faecalis Deposited 2003-01-18 | Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
34–376(343 aa)
Chain B
34–376(343 aa)
Chain C
34–376(343 aa)
|
Mutation:H145A Mutation:H145A Mutation:H145A | CU COPPER (II) ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;300 K;PEG 8000, sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.90 Å R-free 0.225 |
| 1NPN Crystal structure of a copper reconstituted H145A mutant of nitrite reductase from Alcaligenes faecalis Deposited 2003-01-18 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
34–376(343 aa)
Chain B
34–376(343 aa)
Chain C
34–376(343 aa)
|
Mutation:H145A Mutation:H145A Mutation:H145A | CU COPPER (II) ION × 6 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;300 K;PEG 8000, sodium acetate , pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
|
Resolution 1.80 Å R-free 0.195 |
| 1NTD STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE MUTANT M150E THAT CONTAINS ZINC Deposited 1995-07-03 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
34–376(343 aa)
|
Mutation:M150E | CU COPPER (II) ION × 6 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.30 Å R-free 0.232 |
| 1SJM Nitrite bound copper containing nitrite reductase Deposited 2004-03-03 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 ACT ACETATE ION × 5 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;PEG 4000, sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 321K
|
Resolution 1.40 Å R-free 0.138 |
| 1SNR Nitric oxide bound to Cu nitrite reductase Deposited 2004-03-11 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 ACT ACETATE ION × 8 NO NITRIC OXIDE × 3 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;291 K;PEG4000, sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 291K, pH 4.0
|
Resolution 1.31 Å R-free 0.141 |
| 1ZDQ Crystal Structure of Met150Gly AfNiR with Methylsulfanyl Methane Bound Deposited 2005-04-14 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–375(336 aa)
Chain B
40–375(336 aa)
Chain C
40–375(336 aa)
|
Mutation:M150G Mutation:M150G Mutation:M150G | CU COPPER (II) ION × 6 MSM (METHYLSULFANYL)METHANE × 3 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.80 Å R-free 0.199 |
| 1ZDS Crystal Structure of Met150Gly AfNiR with Acetamide Bound Deposited 2005-04-14 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–375(336 aa)
Chain B
40–375(336 aa)
Chain C
40–375(336 aa)
|
Mutation:M150G Mutation:M150G Mutation:M150G | CU COPPER (II) ION × 6 ACM ACETAMIDE × 6 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.55 Å R-free 0.214 |
| 2AFN STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE AND A COPPER SITE MUTANT, M150E, THAT CONTAINS ZINC Deposited 1995-07-03 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
34–376(343 aa)
Chain B
34–376(343 aa)
Chain C
34–376(343 aa)
|
Not recorded | CU COPPER (II) ION × 6 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 2.00 Å R-free 0.223 |
| 2B08 Reduced acetamide-bound M150G Nitrite Reductase from Alcaligenes faecalis Deposited 2005-09-13 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
37–376(340 aa)
Chain B
37–376(340 aa)
Chain C
37–376(340 aa)
|
Mutation:M150G Mutation:M150G Mutation:M150G | CU1 COPPER (I) ION × 9 ACM ACETAMIDE × 4 | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 1.90 Å R-free 0.220 |
| 2E86 Azide bound to copper containing nitrite reductase from A. faecalis S-6 Deposited 2007-01-19 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:residues 4-340
Chain B
40–376(337 aa)
Fragment:residues 4-340
Chain C
40–376(337 aa)
Fragment:residues 4-340
|
Not recorded | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 ACT ACETATE ION × 10 AZI AZIDE ION × 3 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;6-8 % PEG 4000, 0.1M sodium acetate buffer pH 4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å R-free 0.179 |
| 2FJS Crystal Structure of Anaerobically Reduced Wild Type Nitrite Reductase from A. faecalis Deposited 2006-01-03 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 ACT ACETATE ION × 10 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;8-10% PEG 4000, 0.1 M NaOAC, pH 4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.85 Å R-free 0.180 |
| 2P80 Solution structure of the complex between nitrite reductase and pseudoazurin from A. faecalis Deposited 2007-03-21 | Different construct Different oligomeric state Different ligand/ion Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein heterocomplex Heteromer;Protein × 4 PDB declaration: tetrameric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU COPPER (II) ION × 7 GD GADOLINIUM ATOM × 9 |
SOLUTION NMR
NMR measurement conditions
pH 6.5;298 K;Ionic strength (raw mmCIF value) 50 mM phosphate;Pressure 1
NMR measurement conditions
pH 6.5;298 K;Ionic strength (raw mmCIF value) 50 mM phosphate;Pressure 1
NMR measurement conditions
pH 6.5;298 K;Ionic strength (raw mmCIF value) 50 mM phosphate;Pressure 1
NMR measurement conditions
pH 6.5;298 K;Ionic strength (raw mmCIF value) 50 mM phosphate;Pressure 1
NMR measurement conditions
pH 6.5;298 K;Ionic strength (raw mmCIF value) 50 mM phosphate;Pressure 1
NMR measurement conditions
pH 6.5;298 K;Ionic strength (raw mmCIF value) 50 mM phosphate;Pressure 1
NMR sample composition
250 mM 15N, 2H pseudoazurin in complex with nitrite reductase -bound GdCLaNP at position 221/223 (0.38 eq), in 50 mM phosphate buffer, H2O, 6% (v/v) D2O | H2O, 6% (v/v) D2O
NMR sample composition
250 mM 15N, 2H pseudoazurin in complex with nitrite reductase -bound YCLaNP at position 221/223 (0.38 eq), in 50 mM phosphate buffer, H2O, 6% (v/v) D2O | H2O, 6% (v/v) D2O
NMR sample composition
250 mM 15N, 2H pseudoazurin in complex with nitrite reductase -bound GdCLaNP at position 234/236 (0.32 eq), in 50 mM phosphate buffer, H2O, 6% (v/v) D2O | H2O, 6% (v/v) D2O
NMR sample composition
250 mM 15N, 2H pseudoazurin in complex with nitrite reductase -bound YCLaNP at position 234/236 (0.32 eq), in 50 mM phosphate buffer, H2O, 6% (v/v) D2O | H2O, 6% (v/v) D2O
NMR sample composition
250 mM 15N, 2H pseudoazurin in complex with nitrite reductase -bound GdCLaNP at position 333/336 (0.53 eq), in 50 mM phosphate buffer, H2O, 6% (v/v) D2O | H2O, 6% (v/v) D2O
NMR sample composition
250 mM 15N, 2H pseudoazurin in complex with nitrite reductase -bound YCLaNP at position 333/336 (0.53 eq), in 50 mM phosphate buffer, H2O, 6% (v/v) D2O | H2O, 6% (v/v) D2O
|
Resolution not provided |
| 2PP7 Crystal structure of anaerobically manipulated wild type oxidized AfNiR (acetate bound) Deposited 2007-04-28 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 ACT ACETATE ION × 13 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;6-11% PEG 4000, 100mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.65 Å R-free 0.180 |
| 2PP8 Formate bound to oxidized wild type AfNiR Deposited 2007-04-28 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 ACT ACETATE ION × 8 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 FMT FORMIC ACID × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;6-11% PEG 4000, 100mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.50 Å R-free 0.201 |
| 2PP9 Nitrate bound wild type oxidized AfNiR Deposited 2007-04-28 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 NO3 NITRATE ION × 3 ACT ACETATE ION × 8 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;6-11% PEG 4000, 100mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.195 |
| 2PPA Anaerobically manipulated wild type oxidized AfNiR bound to nitrous oxide Deposited 2007-04-28 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 ACT ACETATE ION × 10 N2O NITROUS OXIDE × 2 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;6-11% PEG 4000, 100mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.69 Å R-free 0.224 |
| 2PPC Oxidized wild type AfNiR exposed to NO (nitrite bound) Deposited 2007-04-28 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 NO2 NITRITE ION × 3 ACT ACETATE ION × 10 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;6-11% PEG 4000, 100mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.58 Å R-free 0.182 |
| 2PPD Oxidized H145A mutant of AfNiR bound to nitric oxide Deposited 2007-04-28 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
34–376(343 aa)
Chain B
34–376(343 aa)
Chain C
34–376(343 aa)
|
Mutation:H145A Mutation:H145A Mutation:H145A | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 NO NITRIC OXIDE × 2 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 ACT ACETATE ION × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;6-11% polyethylene glycol 6000, 0.1 M ammonium sulfate and 0.01 M sodium acetate buffer, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.80 Å R-free 0.212 |
| 2PPE Reduced H145A mutant of AfNiR exposed to NO Deposited 2007-04-28 | Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
34–376(343 aa)
Chain B
34–376(343 aa)
Chain C
34–376(343 aa)
|
Mutation:H145A Mutation:H145A Mutation:H145A | CU1 COPPER (I) ION × 3 CU COPPER (II) ION × 3 ACT ACETATE ION × 2 NO NITRIC OXIDE × 1 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;6-11% polyethylene glycol 6000, 0.1 M ammonium sulfate and 0.01 M sodium acetate buffer, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.75 Å R-free 0.196 |
| 2PPF Reduced mutant D98N of AfNiR exposed to nitric oxide Deposited 2007-04-28 | Different construct Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Mutation:D98N Mutation:D98N Mutation:D98N | CU1 COPPER (I) ION × 5 CU COPPER (II) ION × 3 ACT ACETATE ION × 8 NO NITRIC OXIDE × 4 TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL × 1 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4;298 K;7-12% polyethylene glycol 4000, 75 mM acetamide and 10 mM sodium acetate buffer, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.65 Å R-free 0.170 |
| 3H4F Met62Leu variant of nitrite reductase from Alcaligenes faeclis Deposited 2009-04-19 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–375(336 aa)
Chain B
40–375(336 aa)
Chain C
40–375(336 aa)
|
Mutation:Met62Leu Mutation:Met62Leu Mutation:Met62Leu | CU COPPER (II) ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;298 K;pH 4.5, VAPOR DIFFUSION, temperature 298K
|
Resolution 2.10 Å R-free 0.227 |
| 3H4H Met94Thr/Phe312Cys variant of nitrite reductase from Alcaligenes faecalis Deposited 2009-04-20 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
41–375(335 aa)
Chain B
41–375(335 aa)
Chain C
41–375(335 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) Non-standard monomer:Yes (specific site not provided by mmCIF) | CU COPPER (II) ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.5;298 K;pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 1.60 Å R-free 0.226 |
| 3H56 Met150Leu/Phe312Cys variant of nitrite reductase from Alcaligenes faecalis Deposited 2009-04-21 | Different construct Different mutation/modification Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–375(336 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) | CU COPPER (II) ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION;pH 4.5;298 K;pH 4.5, VAPOR DIFFUSION, temperature 298K
|
Resolution 1.50 Å R-free 0.204 |
| 4YSC Completely oxidized structure of copper nitrite reductase from Alcaligenes faecalis Deposited 2015-03-17 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:UNP residues 40-376
Chain B
40–376(337 aa)
Fragment:UNP residues 40-376
Chain C
40–376(337 aa)
Fragment:UNP residues 40-376
|
Not recorded | CU COPPER (II) ION × 6 CL CHLORIDE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;293 K;100 mM sodium acetate pH 4.0, 10% PEG 4000
|
Resolution 2.03 Å R-free 0.203 |
| 4YSE High resolution synchrotron structure of copper nitrite reductase from Alcaligenes faecalis Deposited 2015-03-17 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:UNP residues 40-376
Chain B
40–376(337 aa)
Fragment:UNP residues 40-376
Chain C
40–376(337 aa)
Fragment:UNP residues 40-376
|
Not recorded | CU COPPER (II) ION × 6 MPD (4S)-2-METHYL-2,4-PENTANEDIOL × 6 ACY ACETIC ACID × 5 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4;293 K;100mM sodium acetate, pH 4, 8% PEG4000
|
Resolution 1.20 Å R-free 0.168 |
| 5D4H High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography Deposited 2015-08-07 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:UNP residue 40-376
Chain B
40–376(337 aa)
Fragment:UNP residue 40-376
Chain C
40–376(337 aa)
Fragment:UNP residue 40-376
|
Not recorded | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 GOL GLYCEROL × 22 ACY ACETIC ACID × 2 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.1;293 K;100mM sodium acetate (pH 4.1) and 7% PEG 4000
|
Resolution 1.30 Å R-free 0.165 |
| 5D4I Intact nitrite complex of a copper nitrite reductase determined by serial femtosecond crystallography Deposited 2015-08-07 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:UNP residues 40-376
Chain B
40–376(337 aa)
Fragment:UNP residues 40-376
Chain C
40–376(337 aa)
Fragment:UNP residues 40-376
|
Not recorded | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
BATCH MODE;pH 4;293 K;100mM sodium acetate (pH 4.0) and 12% PEG 4000
|
Resolution 1.60 Å R-free 0.196 |
| 5D4J Chloride-bound form of a copper nitrite reductase from Alcaligenes faecals Deposited 2015-08-07 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Fragment:UNP residues 40-376
Chain B
40–376(337 aa)
Fragment:UNP residues 40-376
Chain C
40–376(337 aa)
Fragment:UNP residues 40-376
|
Not recorded | CU COPPER (II) ION × 6 CL CHLORIDE ION × 3 GOL GLYCEROL × 10 ACY ACETIC ACID × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 4.1;293 K;1:1 mixture of the purified protein solution (40 mg/ml) and a reservoir solution composed of 100 mM sodium acetate (pH 4.1) and 7% PEG 4000
|
Resolution 2.00 Å R-free 0.232 |
| 5F7A Nitrite complex structure of copper nitrite reductase from Alcaligenes faecalis determined at 293 K Deposited 2015-12-07 | Different construct Different ligand/ion Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU COPPER (II) ION × 6 NO2 NITRITE ION × 3 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.1;293 K;100 mM sodium acetate, 7% PEG 4000
|
Resolution 1.54 Å R-free 0.180 |
| 5F7B Resting state structure of CuNiR form Alcaligenes faecalis determined at 293 K Deposited 2015-12-07 | Different construct Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer;Protein × 3 PDB declaration: trimeric |
Chain A
40–376(337 aa)
Chain B
40–376(337 aa)
Chain C
40–376(337 aa)
|
Not recorded | CU COPPER (II) ION × 6 |
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 4.1;293 K;100 mM sodium acetate, 7% PEG 4000
|
Resolution 1.56 Å R-free 0.177 |
46 other PDB entries and 46 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | NIR_ALCFA |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A; PDBConstruct 1–343; UniProt 34–376 Author chain B; PDBConstruct 1–343; UniProt 34–376 Author chain C; PDBConstruct 1–343; UniProt 34–376 |