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1aw5

5-AMINOLEVULINATE DEHYDRATASE FROM SACCHAROMYCES CEREVISIAE

Method: X-RAY DIFFRACTION D_max: 89.2 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1aw5
deposition_date	1997-10-09
title	5-AMINOLEVULINATE DEHYDRATASE FROM SACCHAROMYCES CEREVISIAE
keywords	DEHYDRATASE, TETRAPYRROLE BIOSYNTHESIS, ALDOLASE, TIM-BARREL OCTAMER; DEHYDRATASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	23.22 Å
rg_electron	22.40 Å
i0	22807300.00
molecular_weight	36257.0 kDa
excluded_volume	45255 Å³
envelope_volume	59267 Å³
shell_volume	22650 Å³
envelope_diameter	91.9 Å
shell_rg	28.20 Å
envelope_rg	25.19 Å
shape_rg	22.36 Å
total_rg	23.26 Å
total_atoms	2529
n_residues	321
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	89.2 Å
rg_real	23.59 Å
rg_real_error	0.92 Å
i0_real	2.2810e+07
i0_real_error	3.7870e+05
rg_reciprocal	23.50 Å
i0_reciprocal	22810000.0000
total_estimate	0.7493
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	26.1 Å
skewness	0.962
kurtosis	1.203
angular_range	— – 0.3400 Å⁻¹
current_alpha	0.0000
highest_alpha	4717000.0000
n_real_points	66
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.355; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.748; Smooth: 0.923

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	5-AMINOLEVULINATE DEHYDRATASE
formula_weight	37620.2 kDa
ec_number	4.2.1.24
mutation	M272V
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2836

MHTAEFLETEPTEISSVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSAPNINRIGVNRLKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIRFIREKFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPARDAACSAPSNGDRKCYQLPPAGRGLARRALERDMSEGADGIIVKPSTFYLDIVRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWLDE

Source

organism	Saccharomyces cerevisiae
common_name	;baker's yeast ;
ncbi_taxonomy_id	4932
host_organism	Escherichia coli

Entity 2 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	2

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	307

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6. Citations (1)

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length_a	102.500 Å
length_b	102.500 Å
length_c	168.300 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	I 4 2 2
int_tables_number	97
crystal_system	—

resolution	2.300 Å
resolution_low	6.000 Å
r_factor	0.1980
r_work	—
r_free	0.2700

fit	/app/data/saxs_computation/aw/1aw5/1aw5.fit
pddf	/app/data/pr_computation/aw/1aw5/1aw5.pr.out
profile	/app/data/saxs_computation/aw/1aw5/1aw5.dat

5-AMINOLEVULINATE DEHYDRATASE FROM SACCHAROMYCES CEREVISIAE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction