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1ayy

GLYCOSYLASPARAGINASE

Method: X-RAY DIFFRACTION D_max: 72.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ayy
deposition_date	1997-11-12
title	GLYCOSYLASPARAGINASE
keywords	GLYCOAMIDASE, HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	23.51 Å
rg_electron	22.60 Å
i0	63845500.00
molecular_weight	61313.0 kDa
excluded_volume	76342 Å³
envelope_volume	85757 Å³
shell_volume	30349 Å³
envelope_diameter	73.9 Å
shell_rg	30.73 Å
envelope_rg	22.89 Å
shape_rg	22.62 Å
total_rg	23.37 Å
total_atoms	4301
n_residues	565
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	72.9 Å
rg_real	23.36 Å
rg_real_error	0.36 Å
i0_real	6.3850e+07
i0_real_error	8.3950e+05
rg_reciprocal	23.40 Å
i0_reciprocal	63850000.0000
total_estimate	0.9000
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	30.3 Å
skewness	0.151
kurtosis	-0.457
angular_range	— – 0.3400 Å⁻¹
current_alpha	0.0000
highest_alpha	22150000.0000
n_real_points	66
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.906; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.986; Smooth: 0.993

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	GLYCOSYLASPARAGINASE
formula_weight	16819.1 kDa
ec_number	3.5.1.26
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,C
atom_count	4501

TTNKPIVLSTWNFGLHANVEAWKVLSKGGKALDAVEKGVRLVEDDPTERSVGYGGRPDRDGRVTLDACIMDENYNIGSVACMEHIKNPISVARAVMEKTPHVMLVGDGALEFALSQGFKKENLLTAESEKEWKEWLKTSQYKPIVNIENHD

Source

organism	Elizabethkingia meningoseptica
ncbi_taxonomy_id	238
host_organism	Escherichia coli

Entity 2 polymer

description	GLYCOSYLASPARAGINASE
formula_weight	15378.6 kDa
ec_number	3.5.1.26
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,D

TIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCIQDGFNFAVHDQKGNRLETPGFALK

Source

organism	Elizabethkingia meningoseptica
ncbi_taxonomy_id	238
host_organism	Escherichia coli

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	200

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6. Citations (1)

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length_a	46.200 Å
length_b	115.600 Å
length_c	52.400 Å
angle_alpha	90.00 °
angle_beta	107.20 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.320 Å
resolution_low	20.000 Å
r_factor	0.1880
r_work	0.1880
r_free	0.2700

fit	/app/data/saxs_computation/ay/1ayy/1ayy.fit
pddf	/app/data/pr_computation/ay/1ayy/1ayy.pr.out
profile	/app/data/saxs_computation/ay/1ayy/1ayy.dat

GLYCOSYLASPARAGINASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)