1b2v

HEME-BINDING PROTEIN A

Method: X-RAY DIFFRACTION Dmax: 52.8 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

PROTEIN (HEME-BINDING PROTEIN A)

Serratia marcescens

UniProt Q54450

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1–188 Not recorded CA CALCIUM ION × 1 HEM PROTOPORPHYRIN IX CONTAINING FE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:pH 4.6;0.2M CACL, 0.1M NA ACETATE PH 4.6, 20% ISOPRPANOL Resolution 1.90 Å R-free 0.218

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 20 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HASA_SERMA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–188; UniProt 1–188

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1b2v

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1b2v
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1b2v
Deposition date deposition_date1998-12-01
Structure title titleHEME-BINDING PROTEIN A
Keywords keywordsHEME ACQUISITION, IRON METABOLISM, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier16.78
Radius of gyration Rg (electron density) rg_electron15.48
Forward intensity I(0) i06836080.00
Molecular weight molecular_weight18388.0 kDa
Excluded volume excluded_volume22609 ų
Envelope volume envelope_volume25319 ų
Hydration-shell volume shell_volume13977 ų
Envelope diameter envelope_diameter51.9
Shell Rg shell_rg21.05
Envelope Rg envelope_rg15.66
Shape Rg shape_rg15.45
Total Rg total_rg16.51
Total atoms total_atoms1300
Residues n_residues173
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax52.8
Rg (real space) rg_real16.68
Rg uncertainty (real space) rg_real_error0.27
I(0) (real space) i0_real6.8360e+06
I(0) uncertainty (real space) i0_real_error7.4570e+04
Rg (reciprocal space) rg_reciprocal16.69
I(0) (reciprocal space) i0_reciprocal6836000.0000
Solution quality estimate total_estimate0.8211
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary21.3
Skewness Skewness skewness0.131
Kurtosis Kurtosis kurtosis-0.389
Angular range angular_range— – 0.4750 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha795900.0000
Real-space data points n_real_points78
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.893; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd1b2va_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.35 — Heme-binding protein A (HasA)
Superfamily Superfamily superfamilyd.35.1 — Heme-binding protein A (HasA)
Family Family familyd.35.1.1 — Heme-binding protein A (HasA)

CATH v4.4 (1 domains)

Domain ID domain_id1b2vA00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology1500 — Heme-binding Protein A; Chain: A;
Homologous superfamily homologous superfamily10 — Haem-binding HasA

8. Citations (2)

9. Files and Curves (10)