SAXSdb — 1b35

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1. Structure Basics

entry_id	1b35
deposition_date	1998-12-17
title	CRICKET PARALYSIS VIRUS (CRPV)
keywords	INSECT PICORNA-LIKE VIRUS, Icosahedral virus, Virus; VIRUS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	34.03 Å
rg_electron	33.53 Å
i0	143316000.00
molecular_weight	95312.0 kDa
excluded_volume	119220 Å³
envelope_volume	172000 Å³
shell_volume	42937 Å³
envelope_diameter	135.8 Å
shell_rg	39.15 Å
envelope_rg	36.03 Å
shape_rg	33.52 Å
total_rg	34.04 Å
total_atoms	6714
n_residues	854
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	127.1 Å
rg_real	34.18 Å
rg_real_error	1.27 Å
i0_real	1.4330e+08
i0_real_error	2.5030e+06
rg_reciprocal	34.09 Å
i0_reciprocal	143300000.0000
total_estimate	0.8132
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	37.9 Å
skewness	0.538
kurtosis	-0.011
angular_range	— – 0.2350 Å⁻¹
current_alpha	0.0000
highest_alpha	31660000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.618; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.758; Smooth: 0.955

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	PROTEIN (CRICKET PARALYSIS VIRUS, VP1)
formula_weight	28853.6 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	6892

VMGEDQQIPRNEAQHGVHPISIDTHRISNNWSPQAMCIGEKVVSIRQLIKRFGIFGDANTLQADGSSFVVAPFTVTSPTKTLTSTRNYTQFDYYYYLYAFWRGSMRIKMVAETQDGTGTPRKKTNFTWFVRMFNSLQDSFNSLISTSSSAVTTTVLPSGTINMGPSTQVIDPTVEGLIEVEVPYYNISHITPAVTIDDGTPSMEDYLKGHSPPCLLTFSPRDSISATNHIITASFMRALGDDFSFMYLLGVPPLVNVARA

Entity 2 polymer

description	PROTEIN (CRICKET PARALYSIS VIRUS, VP2)
formula_weight	28709.2 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

ENSHIENEDKRLTSEQKEIVHFVSEGVTPSTTALPDIVNLSTNYLDKNTREDRIHSIKDFLSRPIIIATNLWSVSDPVEKQLYTANFPEVLISNAMYQDKLKGFVGLRATLVVKVQVNSQPFQQGRLMLQYIPYAQYMPNRVTLINETLQGRSGCPRTDLELSVGTEVEMRIPYVSPHLYYNLITGQGSFGSIYVVVYSQLHDQVSGTGSIEYTVWAHLEDVDVQYPTGANIFTGNEAYIKGTSRYDAAQKAHAA

Entity 3 polymer

description	PROTEIN (CRICKET PARALYSIS VIRUS, VP3)
formula_weight	31917.0 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

SKPTVQGKIGECKLRGQGRMANFDGMDMSHKMALSSTNEIETNEGLAGTSLDVMDLSRVLSIPNYWDRFTWKTSDVINTVLWDNYVSPFKVKPYSATITDRFRCTHMGKVANAFTYWRGSMVYTFKFVKTQYHSGRLRISFIPYYYNTTISTGTPDVSRTQKIVVDLRTSTAVSFTVPYIGSRPWLYCIRPESSWLSKDNTDGALMYNCVSGIVRVEVLNQLVAAQNVFSEIDVICEVNGGPDLEFAGPTCPRYVPYAGDFTLADTRKIEAERTQEYSNNED

Entity 4 polymer

description	PROTEIN (CRICKET PARALYSIS VIRUS, VP4)
formula_weight	5932.7 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	D

AASELKQLETNNSPSTALGQISEGLTTLSHIPVLGNIFSTPAWISAKAADLAKLFGF

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	178

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6. Citations (1)

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length_a	330.000 Å
length_b	334.000 Å
length_c	395.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	120

space_group	I 2 2 2
int_tables_number	23
crystal_system	—

resolution	2.400 Å
resolution_low	15.000 Å
r_factor	0.2280
r_work	0.2280
r_free	0.2420

fit	/app/data/saxs_computation/b3/1b35/1b35.fit
pddf	/app/data/pr_computation/b3/1b35/1b35.pr.out
profile	/app/data/saxs_computation/b3/1b35/1b35.dat

CRICKET PARALYSIS VIRUS (CRPV)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)