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1bj6

1H NMR OF (12-53) NCP7/D(ACGCC) COMPLEX, 10 STRUCTURES

Method: SOLUTION NMR D_max: 41.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bj6
deposition_date	1998-07-03
title	1H NMR OF (12-53) NCP7/D(ACGCC) COMPLEX, 10 STRUCTURES
keywords	COMPLEX (NUCLEOCAPSID PROTEIN-DNA), NUCLEIC ACID, RETROVIRUS, VIRUS MORPHOGENESIS, ZINC FINGER, Viral protein-DNA COMPLEX; Viral protein/DNA
method	SOLUTION NMR

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	11.35 Å
rg_electron	11.28 Å
i0	100534000.00
molecular_weight	64134.0 kDa
excluded_volume	72397 Å³
envelope_volume	14427 Å³
shell_volume	9750 Å³
envelope_diameter	46.5 Å
shell_rg	18.31 Å
envelope_rg	13.57 Å
shape_rg	11.28 Å
total_rg	11.56 Å
total_atoms	8100
n_residues	470
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	41.3 Å
rg_real	11.38 Å
rg_real_error	0.42 Å
i0_real	1.0050e+08
i0_real_error	1.2130e+06
rg_reciprocal	11.38 Å
i0_reciprocal	100500000.0000
total_estimate	0.7681
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	12.0 Å
skewness	0.371
kurtosis	-0.248
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	71590.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.747; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.742; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	;DNA (5'-D(APCPGPCP*C)-3') ;
formula_weight	1465.0 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	D
atom_count	8100

ACGCC

Entity 2 polymer

description	NUCLEOCAPSID PROTEIN 7
formula_weight	4837.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A

NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ

Source

organism	Human immunodeficiency virus 1
ncbi_taxonomy_id	11676

Entity 3 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	2

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	1

space_group	P 1
int_tables_number	1
crystal_system	—

fit	/app/data/saxs_computation/bj/1bj6/1bj6.fit
pddf	/app/data/pr_computation/bj/1bj6/1bj6.pr.out
profile	/app/data/saxs_computation/bj/1bj6/1bj6.dat

1H NMR OF (12-53) NCP7/D(ACGCC) COMPLEX, 10 STRUCTURES

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)