SAXSdb — 1bpl

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1. Structure Basics

entry_id	1bpl
deposition_date	1995-07-13
title	GLYCOSYLTRANSFERASE
keywords	ALPHA-1, 4-GLUCAN-4-GLUCANOHYDROLASE, ALPHA-AMYLASE GLYCOSYLTRANSFERASE, GLYCOSYLTRANSFERASE; GLYCOSYLTRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.19 Å
rg_electron	24.13 Å
i0	48330800.00
molecular_weight	53525.0 kDa
excluded_volume	66501 Å³
envelope_volume	75675 Å³
shell_volume	26911 Å³
envelope_diameter	87.6 Å
shell_rg	30.94 Å
envelope_rg	24.21 Å
shape_rg	24.12 Å
total_rg	24.89 Å
total_atoms	3800
n_residues	469
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	84.8 Å
rg_real	25.23 Å
rg_real_error	0.61 Å
i0_real	4.8330e+07
i0_real_error	7.2670e+05
rg_reciprocal	25.22 Å
i0_reciprocal	48330000.0000
total_estimate	0.8743
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	29.6 Å
skewness	0.448
kurtosis	-0.149
angular_range	— – 0.3150 Å⁻¹
current_alpha	0.0000
highest_alpha	7266000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.812; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.954; Smooth: 0.974

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	ALPHA-1,4-GLUCAN-4-GLUCANOHYDROLASE
formula_weight	21808.0 kDa
ec_number	3.2.1.1
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	4037

ANLNGTLMQYFEWYMPNDGQHWKRLQNDSAYLAEHGITAVWIPPAYKGTSQADVGYGAYDLYDLGEFHQKGTVRTKYGTKGELQSAIKSLHSRDINVYGDVVINHKGGADATEDVTAVEVDPADRNRVISGEHLIKAWTHFHFPGRGSTYSDFKWHWYHFDGTDWDESRKLNRIYKFQGKAWDWEVSNE

Entity 2 polymer

description	ALPHA-1,4-GLUCAN-4-GLUCANOHYDROLASE
formula_weight	33508.1 kDa
ec_number	3.2.1.1
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

NGNYDYLMYADIDYDHPDVAAEIKRWGTWYANELQLDGFRLDAVKHIKFSFLRDWVNHVREKTGKEMFTVAEYWQNDLGALENYLNKTNFNHSVFDVPLHYQFHAASTQGGGYDMRKLLNSTVVSKHPLKAVTFVDNHDTQPGQSLESTVQTWFKPLAYAFILTRESGYPQVFYGDMYGTKGDSQREIPALKHKIEPILKARKQYAYGAQHDYFDHHDIVGWTREGDSSVANSGLAALITDGPGGAKRMYVGRQNAGETWHDITGNRSEPVVINSEGWGEFHVNGGSVSIYVQR

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	237

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6. Citations (1)

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length_a	119.800 Å
length_b	119.800 Å
length_c	85.400 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.200 Å
resolution_low	8.000 Å
r_factor	0.1670
r_work	0.1670
r_free	—

fit	/app/data/saxs_computation/bp/1bpl/1bpl.fit
pddf	/app/data/pr_computation/bp/1bpl/1bpl.pr.out
profile	/app/data/saxs_computation/bp/1bpl/1bpl.dat

GLYCOSYLTRANSFERASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)