1bq6

CHALCONE SYNTHASE FROM ALFALFA WITH COENZYME A

Method: X-RAY DIFFRACTION Dmax: 79.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

CHALCONE SYNTHASE

Medicago sativa

UniProt P30074

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 2–389 Non-standard monomer:Yes (specific site not provided by mmCIF) SO4 SULFATE ION × 2 COA COENZYME A × 2 X-RAY DIFFRACTION X-ray crystallization conditions:pH 6.5;pH 6.5 Resolution 1.56 Å R-free 0.212

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

15 other PDB entries and 17 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CHS2_MEDSA
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–388; UniProt 2–389

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1bq6

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1bq6
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1bq6
Deposition date deposition_date1998-08-21
Structure title titleCHALCONE SYNTHASE FROM ALFALFA WITH COENZYME A
Keywords keywordsTRANSFERASE, POLYKETIDE SYNTHASE, CHALCONE BIOSYNTHESIS; TRANSFERASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier22.22
Radius of gyration Rg (electron density) rg_electron21.13
Forward intensity I(0) i031819300.00
Molecular weight molecular_weight43468.0 kDa
Excluded volume excluded_volume54490 ų
Envelope volume envelope_volume62366 ų
Hydration-shell volume shell_volume24349 ų
Envelope diameter envelope_diameter81.3
Shell Rg shell_rg28.23
Envelope Rg envelope_rg21.62
Shape Rg shape_rg21.12
Total Rg total_rg22.03
Total atoms total_atoms3042
Residues n_residues387
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax79.4
Rg (real space) rg_real22.17
Rg uncertainty (real space) rg_real_error0.57
I(0) (real space) i0_real3.1820e+07
I(0) uncertainty (real space) i0_real_error4.8220e+05
Rg (reciprocal space) rg_reciprocal22.18
I(0) (reciprocal space) i0_reciprocal31820000.0000
Solution quality estimate total_estimate0.8414
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary26.1
Skewness Skewness skewness0.364
Kurtosis Kurtosis kurtosis-0.099
Angular range angular_range— – 0.3600 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha7304000.0000
Real-space data points n_real_points68
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.679; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.950; Smooth: 0.946

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd1bq6a1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.2 — Chalcone synthase-like
Domain ID domain_idd1bq6a2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.95 — Thiolase-like
Superfamily Superfamily superfamilyc.95.1 — Thiolase-like
Family Family familyc.95.1.2 — Chalcone synthase-like

CATH v4.4 (2 domains)

Domain ID domain_id1bq6A01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Thiolase/Chalcone synthase
Domain ID domain_id1bq6A02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology47 — Peroxisomal Thiolase; Chain A, domain 1
Homologous superfamily homologous superfamily10 — Thiolase/Chalcone synthase

8. Citations (1)

9. Files and Curves (10)