← Back to search

1byu

CANINE GDP-RAN

Method: X-RAY DIFFRACTION D_max: 84.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1byu
deposition_date	1998-10-18
title	CANINE GDP-RAN
keywords	GTPASE, NUCLEAR TRANSPORT, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	25.83 Å
rg_electron	24.98 Å
i0	38072300.00
molecular_weight	48192.0 kDa
excluded_volume	60623 Å³
envelope_volume	77800 Å³
shell_volume	26563 Å³
envelope_diameter	88.1 Å
shell_rg	31.64 Å
envelope_rg	24.71 Å
shape_rg	24.96 Å
total_rg	25.84 Å
total_atoms	3397
n_residues	417
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	84.0 Å
rg_real	25.84 Å
rg_real_error	0.59 Å
i0_real	3.8070e+07
i0_real_error	5.8960e+05
rg_reciprocal	25.84 Å
i0_reciprocal	38070000.0000
total_estimate	0.8952
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.5 Å
skewness	0.335
kurtosis	-0.490
angular_range	— – 0.3050 Å⁻¹
current_alpha	0.0000
highest_alpha	7738000.0000
n_real_points	62
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.885; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.980; Smooth: 0.997

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	PROTEIN (GTP-BINDING PROTEIN RAN)
formula_weight	24482.1 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	3594

MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL

Source

organism	Canis lupus familiaris
common_name	dog
ncbi_taxonomy_id	9615
host_organism	Escherichia coli BL21(DE3)

Entity 2 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	GUANOSINE-5'-DIPHOSPHATE
formula_weight	443.2 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	197

▶

6. Citations (1)

▶

length_a	60.790 Å
length_b	60.433 Å
length_c	61.200 Å
angle_alpha	90.00 °
angle_beta	101.67 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.150 Å
resolution_low	6.000 Å
r_factor	—
r_work	0.1760
r_free	0.2430

fit	/app/data/saxs_computation/by/1byu/1byu.fit
pddf	/app/data/pr_computation/by/1byu/1byu.pr.out
profile	/app/data/saxs_computation/by/1byu/1byu.dat

CANINE GDP-RAN

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction