← Back to search

1bzo

THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY.

Method: X-RAY DIFFRACTION D_max: 53.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1bzo
deposition_date	1998-11-02
title	THREE-DIMENSIONAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM P.LEIOGNATHI, SOLVED BY X-RAY CRYSTALLOGRAPHY.
keywords	MONOMERIC CU, ZN SUPEROXIDE DISMUTASE, PROTEIN-SUBUNIT RECOGNITION, PROTEIN ELECTROSTATIC, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	15.86 Å
rg_electron	14.64 Å
i0	6024640.00
molecular_weight	16377.0 kDa
excluded_volume	19717 Å³
envelope_volume	22283 Å³
shell_volume	13065 Å³
envelope_diameter	52.7 Å
shell_rg	20.32 Å
envelope_rg	14.83 Å
shape_rg	14.41 Å
total_rg	16.21 Å
total_atoms	1113
n_residues	151
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	53.3 Å
rg_real	15.77 Å
rg_real_error	0.27 Å
i0_real	6.0250e+06
i0_real_error	6.7890e+04
rg_reciprocal	15.78 Å
i0_reciprocal	6025000.0000
total_estimate	0.8753
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	20.9 Å
skewness	0.140
kurtosis	-0.330
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	498800.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.793; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.998

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (5)

Entity 1 polymer

description	PROTEIN (SUPEROXIDE DISMUTASE)
formula_weight	15813.9 kDa
ec_number	1.15.1.1
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	1215

QDLTVKMTDLQTGKPVGTIELSQNKYGVVFIPELADLTPGMHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTNKHGFPWTDDNHKGDLPALFVSANGLATNPVLAPRLTLKELKGHAIMIHAGGDNHSDMPKALGGGGARVACGVIQ

Source

organism	Photobacterium leiognathi
ncbi_taxonomy_id	658
host_organism	Escherichia coli

Entity 2 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	COPPER (II) ION
formula_weight	63.5 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	URANYL (VI) ION
formula_weight	270.0 kDa
src_method	syn
entity_count	2

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	102

▶

6. Citations (2)

▶

length_a	86.890 Å
length_b	86.890 Å
length_c	99.010 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	18

space_group	H 3 2
int_tables_number	155
crystal_system	—

resolution	2.100 Å
resolution_low	24.700 Å
r_factor	—
r_work	—
r_free	—

fit	/app/data/saxs_computation/bz/1bzo/1bzo.fit
pddf	/app/data/pr_computation/bz/1bzo/1bzo.pr.out
profile	/app/data/saxs_computation/bz/1bzo/1bzo.dat