CD2, N-TERMINAL DOMAIN (1-99), TRUNCATED FORM

Method: X-RAY DIFFRACTION D_max: 72.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cdc
deposition_date	1995-05-23
title	CD2, N-TERMINAL DOMAIN (1-99), TRUNCATED FORM
keywords	MISFOLDED, METASTABLE, IMMUNE SYSTEM PROTEIN, RECEPTOR; IMMUNE SYSTEM PROTEIN, RECEPTOR
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	19.13 Å
rg_electron	18.32 Å
i0	8485880.00
molecular_weight	21537.0 kDa
excluded_volume	27065 Å³
envelope_volume	31865 Å³
shell_volume	15388 Å³
envelope_diameter	69.7 Å
shell_rg	23.81 Å
envelope_rg	18.72 Å
shape_rg	18.30 Å
total_rg	19.28 Å
total_atoms	1518
n_residues	192
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	72.4 Å
rg_real	19.20 Å
rg_real_error	0.65 Å
i0_real	8.4860e+06
i0_real_error	1.1030e+05
rg_reciprocal	19.19 Å
i0_reciprocal	8486000.0000
total_estimate	0.7974
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	20.1 Å
skewness	0.507
kurtosis	0.012
angular_range	— – 0.4150 Å⁻¹
current_alpha	0.0000
highest_alpha	4014000.0000
n_real_points	73
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.548; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.723; Smooth: 0.996

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	55.900 Å
length_b	57.050 Å
length_c	60.560 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.000 Å
resolution_low	6.000 Å
r_factor	0.1920
r_work	0.1920
r_free	—

description	CD2
formula_weight	11158.6 kDa
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	B,A
atom_count	1628

CD2, N-TERMINAL DOMAIN (1-99), TRUNCATED FORM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Rattus norvegicus
common_name	Norway rat
ncbi_taxonomy_id	10116
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	110

fit	/app/data/saxs_computation/cd/1cdc/1cdc.fit
pddf	/app/data/pr_computation/cd/1cdc/1cdc.pr.out
profile	/app/data/saxs_computation/cd/1cdc/1cdc.dat