BETA-MOMORCHARIN STRUCTURE AT 2.55 A

Method: X-RAY DIFFRACTION D_max: 106.2 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cf5
deposition_date	1999-03-24
title	BETA-MOMORCHARIN STRUCTURE AT 2.55 A
keywords	RIBOSOME-INACTIVATING PROTEIN, RNA N-GLYCOSIDASE ACTIVITY, GLYCOPROTEIN; RIBOSOME-INACTIVATING PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	33.21 Å
rg_electron	32.84 Å
i0	49612500.00
molecular_weight	58226.0 kDa
excluded_volume	73914 Å³
envelope_volume	95302 Å³
shell_volume	25237 Å³
envelope_diameter	106.9 Å
shell_rg	38.10 Å
envelope_rg	32.05 Å
shape_rg	32.83 Å
total_rg	33.32 Å
total_atoms	4120
n_residues	498
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	106.2 Å
rg_real	33.52 Å
rg_real_error	1.03 Å
i0_real	4.9610e+07
i0_real_error	8.3130e+05
rg_reciprocal	33.40 Å
i0_reciprocal	49610000.0000
total_estimate	0.7934
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	26.5 Å
skewness	0.342
kurtosis	-0.908
angular_range	— – 0.2400 Å⁻¹
current_alpha	0.0000
highest_alpha	12060000.0000
n_real_points	49
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.626; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.603; Smooth: 0.829

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

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6. Citations (3)

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length_a	49.090 Å
length_b	50.580 Å
length_c	61.120 Å
angle_alpha	72.98 °
angle_beta	78.39 °
angle_gamma	76.97 °
z_pdb	2

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.550 Å
resolution_low	10.000 Å
r_factor	0.1720
r_work	0.1720
r_free	0.2780

description	PROTEIN (BETA-MOMORCHARIN)
formula_weight	28122.9 kDa
src_method	nat
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	4188

BETA-MOMORCHARIN STRUCTURE AT 2.55 A

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 branched

Entity 3 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)

description	;beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose ;
formula_weight	1026.9 kDa
src_method	man
entity_count	2

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	68

fit	/app/data/saxs_computation/cf/1cf5/1cf5.fit
pddf	/app/data/pr_computation/cf/1cf5/1cf5.pr.out
profile	/app/data/saxs_computation/cf/1cf5/1cf5.dat