;INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY ;

Method: X-RAY DIFFRACTION D_max: 99.8 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cn3
deposition_date	1999-05-24
title	;INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY ;
keywords	VIRAL COAT PROTEIN VP1, VIRAL COAT PROTEIN VP2, VIRAL ENTRY, Viral protein; VIRAL PROTEIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	33.87 Å
rg_electron	32.84 Å
i0	393833000.00
molecular_weight	160090.0 kDa
excluded_volume	200300 Å³
envelope_volume	245940 Å³
shell_volume	58372 Å³
envelope_diameter	104.7 Å
shell_rg	42.50 Å
envelope_rg	32.75 Å
shape_rg	32.77 Å
total_rg	33.76 Å
total_atoms	11261
n_residues	1444
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	99.8 Å
rg_real	33.63 Å
rg_real_error	0.45 Å
i0_real	3.9380e+08
i0_real_error	5.4470e+06
rg_reciprocal	33.78 Å
i0_reciprocal	393900000.0000
total_estimate	0.7182
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	46.7 Å
skewness	0.026
kurtosis	-0.522
angular_range	— – 0.2350 Å⁻¹
current_alpha	0.0000
highest_alpha	89370000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.944; Stabil: 1.000; Sysdev: 0.214; Positv: 1.000; Valcen: 0.970; Smooth: 0.887

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	219.000 Å
length_b	219.000 Å
length_c	99.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	30

space_group	P 31 2 1
int_tables_number	152
crystal_system	—

resolution	2.200 Å
resolution_low	20.000 Å
r_factor	—
r_work	0.2300
r_free	0.2600

description	COAT PROTEIN VP1
formula_weight	31501.6 kDa
src_method	man
entity_count	5

type	polypeptide(L)
strand_id	A,B,C,D,E
atom_count	11261

;INTERACTION OF POLYOMAVIRUS INTERNAL PROTEIN VP2 WITH MAJOR CAPSID PROTEIN VP1 AND IMPLICATIONS FOR PARTICIPATION OF VP2 IN VIRAL ENTRY ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Polyomavirus
ncbi_taxonomy_id	10624
host_organism	Erinaceus europaeus

description	FRAGMENT OF COAT PROTEIN VP2
formula_weight	2797.2 kDa
src_method	syn
entity_count	1

fit	/app/data/saxs_computation/cn/1cn3/1cn3.fit
pddf	/app/data/pr_computation/cn/1cn3/1cn3.pr.out
profile	/app/data/saxs_computation/cn/1cn3/1cn3.dat