CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER

entry_id	1d2i
deposition_date	1999-09-23
title	CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER
keywords	RESTRICTION ENDONUCLEASE, RESTRICTION ENZYME, PROTEIN-DNA COMPLEX, HYDROLASE-DNA COMPLEX; HYDROLASE/DNA
method	X-RAY DIFFRACTION

rg_guinier	23.21 Å
rg_electron	22.59 Å
i0	73065700.00
molecular_weight	61204.0 kDa
excluded_volume	73867 ų
envelope_volume	86457 ų
shell_volume	30574 ų
envelope_diameter	73.5 Å
shell_rg	30.93 Å
envelope_rg	22.88 Å
shape_rg	22.58 Å
total_rg	23.42 Å
total_atoms	4242
n_residues	463
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	72.0 Å
rg_real	23.07 Å
rg_real_error	0.35 Å
i0_real	7.3070e+07
i0_real_error	8.5040e+05
rg_reciprocal	23.10 Å
i0_reciprocal	73070000.0000
total_estimate	0.7187
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	29.9 Å
skewness	0.170
kurtosis	-0.401
angular_range	— – 0.3400 Å−1
current_alpha	0.0000
highest_alpha	18910000.0000
n_real_points	66
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.898; Stabil: 1.000; Sysdev: 0.223; Positv: 1.000; Valcen: 0.984; Smooth: 0.994

Unit Cell

length_a	48.800 Å
length_b	101.700 Å
length_c	116.900 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

Symmetry

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

Refinement

resolution	1.700 Å
resolution_low	20.000 Å
r_factor	0.1820
r_work	0.1820
r_free	0.2000

Diffraction

temperature

123.0 K

Files (7)

• pr_distribution /app/data/pr_computation/d2/1d2i/pr_distribution.json
• pr_output /app/data/pr_computation/d2/1d2i/1d2i.pr.out
• pr_plot /app/data/visualization/pr_computation/d2/1d2i/1d2i_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/d2/1d2i/1d2i.dat
• saxs_fit /app/data/saxs_computation/d2/1d2i/1d2i.fit
• saxs_log /app/data/saxs_computation/d2/1d2i/1d2i.log
• saxs_plot /app/data/visualization/saxs_computation/d2/1d2i/1d2i_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/d2/1d2i/1d2i.fit
pddf	/app/data/pr_computation/d2/1d2i/1d2i.pr.out
profile	/app/data/saxs_computation/d2/1d2i/1d2i.dat