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1d5b

UNLIGANDED MATURE OXY-COPE CATALYTIC ANTIBODY

Method: X-RAY DIFFRACTION D_max: 105.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1d5b
deposition_date	1999-10-06
title	UNLIGANDED MATURE OXY-COPE CATALYTIC ANTIBODY
keywords	immune system; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	32.06 Å
rg_electron	31.36 Å
i0	143967000.00
molecular_weight	94402.0 kDa
excluded_volume	117630 Å³
envelope_volume	149640 Å³
shell_volume	40226 Å³
envelope_diameter	112.7 Å
shell_rg	38.03 Å
envelope_rg	30.81 Å
shape_rg	31.35 Å
total_rg	31.97 Å
total_atoms	6643
n_residues	864
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	105.0 Å
rg_real	32.00 Å
rg_real_error	0.64 Å
i0_real	1.4400e+08
i0_real_error	2.1730e+06
rg_reciprocal	32.03 Å
i0_reciprocal	144000000.0000
total_estimate	0.8911
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	40.7 Å
skewness	0.287
kurtosis	-0.340
angular_range	— – 0.2450 Å⁻¹
current_alpha	0.0001
highest_alpha	18370000.0000
n_real_points	50
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.896; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.894

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	chimeric OXY-COPE catalytic ANTIBODY AZ-28 (light chain)
formula_weight	23563.2 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,L
atom_count	6717

DIKMTQSPSSMYASLGERVTITCKASQDINSYLNWFQQKPGKSPKTLIYRTNRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR

Source

organism	Homo sapiens
common_name	Human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 polymer

description	chimeric OXY-COPE catalytic ANTIBODY AZ-28 (HEAVY chain)
formula_weight	23624.3 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	B,H

QVQLQQSGAELMKPGASVKISCKATGYTFSSFWIEWVKQRPGHGLEWIGEILPGSGGTHYNEKFKGKATFTADKSSNTAYMQLSSLTSEDSAVYYCARGHSYYFYDGDYWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK

Source

organism	Homo sapiens
common_name	Human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 3 non-polymer

description	CADMIUM ION
formula_weight	112.4 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	74

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6. Citations (1)

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length_a	77.420 Å
length_b	80.670 Å
length_c	134.750 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.800 Å
resolution_low	20.000 Å
r_factor	0.2320
r_work	0.2320
r_free	0.2850

fit	/app/data/saxs_computation/d5/1d5b/1d5b.fit
pddf	/app/data/pr_computation/d5/1d5b/1d5b.pr.out
profile	/app/data/saxs_computation/d5/1d5b/1d5b.dat

UNLIGANDED MATURE OXY-COPE CATALYTIC ANTIBODY

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)