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3j42

Obstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Envelope protein E

OrganismNot specified

UniProt O11875

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 720 PrM × 180 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 180 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 180 （P01634,Q7TS98） Consistent with protein count
2 Insufficient information Heteromer Protein 12 PrM × 3 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 3 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 3 （P01634,Q7TS98） Consistent with protein count
3 Insufficient information Heteromer Protein 60 PrM × 15 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 15 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 15 （P01634,Q7TS98） Consistent with protein count
4 Insufficient information Heteromer Protein 72 PrM × 18 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 18 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 18 （P01634,Q7TS98） Consistent with protein count
5 Insufficient information Heteromer Protein 12 PrM × 3 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 3 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 3 （P01634,Q7TS98） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
3c6d 3c6d 3c6d 3c6d 3c6d 3ixy 3ixy 3ixy 3ixy 3ixy 3j42 3j42

16 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name O11875_9FLAV
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–390； UniProt 281–675 Author chain B； PDBConstruct 1–390； UniProt 281–675 Author chain C； PDBConstruct 1–390； UniProt 281–675

PrM

OrganismNot specified

UniProt Q3BCY5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 720 Envelope protein E × 180 （O11875） Ig heavy chain V region MOPC 21, Igh protein chimera × 180 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 180 （P01634,Q7TS98） Consistent with protein count
2 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） Ig heavy chain V region MOPC 21, Igh protein chimera × 3 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 3 （P01634,Q7TS98） Consistent with protein count
3 Insufficient information Heteromer Protein 60 Envelope protein E × 15 （O11875） Ig heavy chain V region MOPC 21, Igh protein chimera × 15 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 15 （P01634,Q7TS98） Consistent with protein count
4 Insufficient information Heteromer Protein 72 Envelope protein E × 18 （O11875） Ig heavy chain V region MOPC 21, Igh protein chimera × 18 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 18 （P01634,Q7TS98） Consistent with protein count
5 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） Ig heavy chain V region MOPC 21, Igh protein chimera × 3 （P01783,Q6PIP8） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 3 （P01634,Q7TS98） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
3j42 3j42 3j42 3j42 3j42

5 assemblies

View Construct and Data Evidence
UniProt name Q3BCY5_9FLAV
Isoform —
PDB entities 2
Chains and sequence ranges Author chain D； PDBConstruct 1–81； UniProt 1–81 Author chain E； PDBConstruct 1–81； UniProt 1–81 Author chain F； PDBConstruct 1–81； UniProt 1–81

Ig heavy chain V region MOPC 21, Igh protein chimera

Mus musculus

UniProt P01783

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 720 Envelope protein E × 180 （O11875） PrM × 180 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 180 （P01634,Q7TS98） Consistent with protein count
2 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） PrM × 3 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 3 （P01634,Q7TS98） Consistent with protein count
3 Insufficient information Heteromer Protein 60 Envelope protein E × 15 （O11875） PrM × 15 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 15 （P01634,Q7TS98） Consistent with protein count
4 Insufficient information Heteromer Protein 72 Envelope protein E × 18 （O11875） PrM × 18 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 18 （P01634,Q7TS98） Consistent with protein count
5 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） PrM × 3 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 3 （P01634,Q7TS98） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1igc 3j42 3j42 3j42 3j42 3j42 4kvc

7 assemblies

View Construct and Data Evidence
UniProt name HVM16_MOUSE
Isoform —
PDB entities 3
Chains and sequence ranges Author chain G； PDBConstruct 1–103； UniProt 17–119 Author chain I； PDBConstruct 1–103； UniProt 17–119 Author chain K； PDBConstruct 1–103； UniProt 17–119

Ig heavy chain V region MOPC 21, Igh protein chimera

Mus musculus

UniProt Q6PIP8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 720 Envelope protein E × 180 （O11875） PrM × 180 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 180 （P01634,Q7TS98） Consistent with protein count
2 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） PrM × 3 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 3 （P01634,Q7TS98） Consistent with protein count
3 Insufficient information Heteromer Protein 60 Envelope protein E × 15 （O11875） PrM × 15 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 15 （P01634,Q7TS98） Consistent with protein count
4 Insufficient information Heteromer Protein 72 Envelope protein E × 18 （O11875） PrM × 18 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 18 （P01634,Q7TS98） Consistent with protein count
5 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） PrM × 3 （Q3BCY5） Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera × 3 （P01634,Q7TS98） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
2ai0 2ai0 2ai0 2ai0 2ai0 2ai0 2ai0 2ai0 2ai0 2ai0 2ai0 2ai0

19 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name Q6PIP8_MOUSE
Isoform —
PDB entities 3
Chains and sequence ranges Author chain G； PDBConstruct 106–216； UniProt 120–230 Author chain I； PDBConstruct 106–216； UniProt 120–230 Author chain K； PDBConstruct 106–216； UniProt 120–230

Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera

Mus musculus

UniProt P01634

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 720 Envelope protein E × 180 （O11875） PrM × 180 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 180 （P01783,Q6PIP8） Consistent with protein count
2 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） PrM × 3 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 3 （P01783,Q6PIP8） Consistent with protein count
3 Insufficient information Heteromer Protein 60 Envelope protein E × 15 （O11875） PrM × 15 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 15 （P01783,Q6PIP8） Consistent with protein count
4 Insufficient information Heteromer Protein 72 Envelope protein E × 18 （O11875） PrM × 18 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 18 （P01783,Q6PIP8） Consistent with protein count
5 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） PrM × 3 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 3 （P01783,Q6PIP8） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1igc 3j42 3j42 3j42 3j42 3j42 4kvc

7 assemblies

View Construct and Data Evidence
UniProt name KV5A2_MOUSE
Isoform —
PDB entities 4
Chains and sequence ranges Author chain H； PDBConstruct 1–107； UniProt 30–136 Author chain J； PDBConstruct 1–107； UniProt 30–136 Author chain L； PDBConstruct 1–107； UniProt 30–136

Ig kappa chain V-V region MOPC 21, Anti-colorectal carcinoma light chain chimera

Mus musculus

UniProt Q7TS98

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Insufficient information Heteromer Protein 720 Envelope protein E × 180 （O11875） PrM × 180 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 180 （P01783,Q6PIP8） Consistent with protein count
2 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） PrM × 3 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 3 （P01783,Q6PIP8） Consistent with protein count
3 Insufficient information Heteromer Protein 60 Envelope protein E × 15 （O11875） PrM × 15 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 15 （P01783,Q6PIP8） Consistent with protein count
4 Insufficient information Heteromer Protein 72 Envelope protein E × 18 （O11875） PrM × 18 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 18 （P01783,Q6PIP8） Consistent with protein count
5 Insufficient information Heteromer Protein 12 Envelope protein E × 3 （O11875） PrM × 3 （Q3BCY5） Ig heavy chain V region MOPC 21, Igh protein chimera × 3 （P01783,Q6PIP8） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
1d5b 1d5b 1d5b 1d5i 1d6v 3j42 3j42 3j42 3j42 3j42 4kvc 5tr8

13 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name Q7TS98_MOUSE
Isoform —
PDB entities 4
Chains and sequence ranges Author chain H； PDBConstruct 108–212； UniProt 130–234 Author chain J； PDBConstruct 108–212； UniProt 130–234 Author chain L； PDBConstruct 108–212； UniProt 130–234

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id3j42
Deposition date deposition_date2013-06-13
Structure title titleObstruction of Dengue Virus Maturation by Fab Fragments of the 2H2 Antibody
Keywords keywordsDengue, maturation, immature, antibody, VIRUS-IMMUNE SYSTEM complex; VIRUS/IMMUNE SYSTEM
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

3j42__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

3j42__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 1012 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

3j42__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)263.60 Å
Total Rg207.00 Å
Atom count588780
Residues77040
Excluded volume21926000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 3j42__assembly_1__model_1 720-meric （720） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 3j42__assembly_2__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 3j42__assembly_3__model_1 60-meric （60） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 3j42__assembly_4__model_1 72-meric （72） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 3j42__assembly_5__model_1 dodecameric （12） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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7. Citations (1)