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1dbb

;THREE-DIMENSIONAL STRUCTURE OF AN ANTI-STEROID FAB' AND PROGESTERONE-FAB' COMPLEX ;

Method: X-RAY DIFFRACTION D_max: 81.6 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dbb
deposition_date	1992-11-11
title	;THREE-DIMENSIONAL STRUCTURE OF AN ANTI-STEROID FAB' AND PROGESTERONE-FAB' COMPLEX ;
keywords	IMMUNOGLOBULIN; IMMUNOGLOBULIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	26.03 Å
rg_electron	24.99 Å
i0	38036200.00
molecular_weight	47906.0 kDa
excluded_volume	59958 Å³
envelope_volume	74449 Å³
shell_volume	25087 Å³
envelope_diameter	79.6 Å
shell_rg	32.01 Å
envelope_rg	24.44 Å
shape_rg	24.98 Å
total_rg	25.82 Å
total_atoms	3377
n_residues	435
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	81.6 Å
rg_real	25.98 Å
rg_real_error	0.53 Å
i0_real	3.8040e+07
i0_real_error	5.2470e+05
rg_reciprocal	26.00 Å
i0_reciprocal	38040000.0000
total_estimate	0.9122
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	29.4 Å
skewness	0.211
kurtosis	-0.631
angular_range	— – 0.3050 Å⁻¹
current_alpha	0.0000
highest_alpha	6588000.0000
n_real_points	62
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.964; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.988; Smooth: 0.973

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	IGG1-KAPPA DB3 FAB (LIGHT CHAIN)
formula_weight	23880.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	L
atom_count	3377

DVVMTQIPLSLPVNLGDQASISCRSSQSLIHSNGNTYLHWYLQKPGQSPKLLMYKVSNRFYGVPDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQSSHVPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090

Entity 2 polymer

description	IGG1-KAPPA DB3 FAB (HEAVY CHAIN)
formula_weight	23754.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H

QIQLVQSGPELKKPGETVKISCKASGYAFTNYGVNWVKEAPGKELKWMGWINIYTGEPTYVDDFKGRFAFSLETSASTAYLEINNLKNEDTATYFCTRGDYVNWYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPR

Source

organism	Mus musculus
common_name	house mouse
ncbi_taxonomy_id	10090

Entity 3 non-polymer

description	PROGESTERONE
formula_weight	314.5 kDa
src_method	syn
entity_count	1

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6. Citations (2)

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length_a	134.760 Å
length_b	134.760 Å
length_c	124.210 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 64 2 2
int_tables_number	181
crystal_system	—

resolution	2.700 Å
resolution_low	— Å
r_factor	0.2100
r_work	0.2100
r_free	—

fit	/app/data/saxs_computation/db/1dbb/1dbb.fit
pddf	/app/data/pr_computation/db/1dbb/1dbb.pr.out
profile	/app/data/saxs_computation/db/1dbb/1dbb.dat

;THREE-DIMENSIONAL STRUCTURE OF AN ANTI-STEROID FAB' AND PROGESTERONE-FAB' COMPLEX ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)