DBL AND PLECKSTRIN HOMOLOGY DOMAINS FROM HSOS1

Method: X-RAY DIFFRACTION D_max: 78.5 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dbh
deposition_date	1998-12-17
title	DBL AND PLECKSTRIN HOMOLOGY DOMAINS FROM HSOS1
keywords	GUANINE NUCLEOTIDE EXCHANGE FACTOR, GENE REGULATION; GENE REGULATION
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.04 Å
rg_electron	23.88 Å
i0	26940300.00
molecular_weight	39463.0 kDa
excluded_volume	49142 Å³
envelope_volume	63238 Å³
shell_volume	22728 Å³
envelope_diameter	83.4 Å
shell_rg	30.23 Å
envelope_rg	23.97 Å
shape_rg	23.89 Å
total_rg	24.65 Å
total_atoms	2748
n_residues	332
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	78.5 Å
rg_real	25.05 Å
rg_real_error	0.54 Å
i0_real	2.6940e+07
i0_real_error	3.8310e+05
rg_reciprocal	25.05 Å
i0_reciprocal	26940000.0000
total_estimate	0.9074
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	24.9 Å
skewness	0.282
kurtosis	-0.583
angular_range	— – 0.3150 Å⁻¹
current_alpha	0.0000
highest_alpha	4902000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.953; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.958; Smooth: 0.974

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	104.400 Å
length_b	70.440 Å
length_c	73.830 Å
angle_alpha	90.00 °
angle_beta	96.29 °
angle_gamma	90.00 °
z_pdb	4

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	2.300 Å
resolution_low	30.000 Å
r_factor	0.2290
r_work	0.2290
r_free	0.2690

description	PROTEIN (HUMAN SOS 1)
formula_weight	41312.8 kDa
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	2817

DBL AND PLECKSTRIN HOMOLOGY DOMAINS FROM HSOS1

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli BL21

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	69

fit	/app/data/saxs_computation/db/1dbh/1dbh.fit
pddf	/app/data/pr_computation/db/1dbh/1dbh.pr.out
profile	/app/data/saxs_computation/db/1dbh/1dbh.dat