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1deq

THE CRYSTAL STRUCTURE OF MODIFIED BOVINE FIBRINOGEN (AT ~4 ANGSTROM RESOLUTION)

Method: X-RAY DIFFRACTION D_max: 331.1 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1deq
deposition_date	1999-11-15
title	THE CRYSTAL STRUCTURE OF MODIFIED BOVINE FIBRINOGEN (AT ~4 ANGSTROM RESOLUTION)
keywords	COILED-COIL, BLOOD CLOTTING; BLOOD CLOTTING
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	— Å
rg_electron	166.10 Å
i0	2951500000.00
molecular_weight	448520.0 kDa
excluded_volume	556870 Å³
envelope_volume	1022900 Å³
shell_volume	65881 Å³
envelope_diameter	567.7 Å
shell_rg	77.85 Å
envelope_rg	162.30 Å
shape_rg	166.80 Å
total_rg	165.60 Å
total_atoms	—
n_residues	—
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	331.1 Å
rg_real	114.20 Å
rg_real_error	1.24 Å
i0_real	2.3520e+09
i0_real_error	5.0130e+07
rg_reciprocal	104.20 Å
i0_reciprocal	2479000000.0000
total_estimate	0.7327
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	73.6 Å
skewness	0.293
kurtosis	-1.025
angular_range	— – 0.0450 Å⁻¹
current_alpha	4.9400
highest_alpha	128500000.0000
n_real_points	10
gnom_version	4.1.3
quality_criteria	AN1: 0.434; Oscil: 0.736; Stabil: 0.801; Sysdev: 1.000; Positv: 1.000; Valcen: 0.911; Smooth: 0.001

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	FIBRINOGEN (ALPHA CHAIN)
formula_weight	42767.4 kDa
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,D,N,Q
atom_count	3900

EDGSDPPSGDFLTEGGGVRGPRLVERQQSACKETGWPFCSDEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWGTFR

Entity 2 polymer

description	FIBRINOGEN (BETA CHAIN)
formula_weight	46901.6 kDa
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	B,E,O,R

KVERKPPDADGCLHADPDLGVLCPTGCKLQDTLVRQERPIRKSIEDLRNTVDSVSRTSSSTFQYITLLKNMWKGRQNQVQDNENVVNEYSSHLEKHQLYIDETVKNNIPTKLRVLRSILENLRSKIQKLESDVSTQMEYCRTPCTVTCNIPVVSGKECEKIIRNEGETSEMYLIQPEDSSKPYRVYCDMKTEKGGWTVIQNRQDGSVDFGRKWDPYKQGFGNIATNAEGKKYCGVPGEYWLGNDRISQLTNMGPTKLLIEMEDWKGDKVTALYEGFTVQNEANKYQLSVSKYKGTAGNALIEGASQLVGENRTMTIHNSMFFSTYDRDNDGWKTTDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGAYTWDMAKHGTDDGVVWMNWQGSWYSMKKMSKMIRPYFPEQ

Entity 3 polymer

description	FIBRINOGEN (GAMMA CHAIN)
formula_weight	46626.6 kDa
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	C,F,P,S

YVATRDNCCILDERFGSYCPTTCGIADFLNNYQTSVDKDLRTLEGILYQVENKTSEARELVKAIQISYNPDQPSKPNNIESATKNSKSMMEEIMKYETLISTHESTIRFLQEIYNSNSQKIVNLRDKVVQLEANCQEPCQDTVKIHDVTGRDCQDVANKGAKESGLYFIRPLKAKQQFLVYCEIDGSGNGWTVFQKRLDGSLDFKKNWIQYKEGFGHLSPTGNTEFWLGNEKIHLISTQSTIPYVLRIQLEDWNGRTSTADYASFKVTGENDKYRLTYAYFIGGDAGDAFDGYDFGDDSSDKFFTSHNGMQFSTWDSDNDKYDGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKTSTPNGYDNGIIWATWKSRWYSMKKTTMKIIPLNRLAIGEGQQHQLGGAKQAGDV

Entity 4 polymer

description	FIBRINOGEN
formula_weight	7677.5 kDa
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	M,Z

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

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6. Citations (4)

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length_a	176.006 Å
length_b	94.935 Å
length_c	209.805 Å
angle_alpha	90.00 °
angle_beta	94.41 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	3.500 Å
resolution_low	10.000 Å
r_factor	0.2630
r_work	0.2570
r_free	0.3700

fit	/app/data/saxs_computation/de/1deq/1deq.fit
pddf	/app/data/pr_computation/de/1deq/1deq.pr.out
profile	/app/data/saxs_computation/de/1deq/1deq.dat

THE CRYSTAL STRUCTURE OF MODIFIED BOVINE FIBRINOGEN (AT ~4 ANGSTROM RESOLUTION)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

6. Citations (4)

7. Files & Curves (10)

Files (7)

Curves (3)