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1drz

U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX

Method: X-RAY DIFFRACTION D_max: 90.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1drz
deposition_date	1998-09-01
title	U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX
keywords	CATALYTIC RNA, RIBOZYME, RNA-BINDING PROTEIN, U1A, HDV, RNA BINDING PROTEIN-RNA COMPLEX; RNA BINDING PROTEIN/RNA
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	26.69 Å
rg_electron	27.41 Å
i0	44054900.00
molecular_weight	34718.0 kDa
excluded_volume	35938 Å³
envelope_volume	52892 Å³
shell_volume	17920 Å³
envelope_diameter	94.9 Å
shell_rg	31.23 Å
envelope_rg	27.34 Å
shape_rg	27.36 Å
total_rg	27.80 Å
total_atoms	2320
n_residues	163
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	90.7 Å
rg_real	27.06 Å
rg_real_error	0.81 Å
i0_real	4.4050e+07
i0_real_error	5.8890e+05
rg_reciprocal	26.95 Å
i0_reciprocal	44050000.0000
total_estimate	0.7883
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	23.1 Å
skewness	0.564
kurtosis	-0.422
angular_range	— – 0.2950 Å⁻¹
current_alpha	0.0000
highest_alpha	2225000.0000
n_real_points	60
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.692; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.437; Smooth: 0.733

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME)
formula_weight	23179.8 kDa
src_method	man
entity_count	1

Polymer

type	polyribonucleotide
strand_id	B
atom_count	2366

GGCCGGCAUGGUCCCAGCCUCCUCGCUGGCGCCGGCUGGGCAACACCAUUGCACUCCGGUGGCGAAUGGGAC

Source

organism	Hepatitis delta virus
ncbi_taxonomy_id	12475
host_organism	Escherichia coli

Entity 2 polymer

description	PROTEIN (U1 SMALL RIBONUCLEOPROTEIN A)
formula_weight	11396.7 kDa
mutation	Y31H, Q36R
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A

AVPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 3 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	3

Entity 4 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	2

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	19

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6. Citations (1)

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length_a	109.350 Å
length_b	109.350 Å
length_c	190.680 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	18

space_group	H 3 2
int_tables_number	155
crystal_system	—

resolution	2.300 Å
resolution_low	20.000 Å
r_factor	0.2810
r_work	0.2810
r_free	0.2840

fit	/app/data/saxs_computation/dr/1drz/1drz.fit
pddf	/app/data/pr_computation/dr/1drz/1drz.pr.out
profile	/app/data/saxs_computation/dr/1drz/1drz.dat

U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)