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1dxh

Catabolic ornithine carbamoyltransferase from Pseudomonas aeruginosa

Method: X-RAY DIFFRACTION D_max: 65.1 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dxh
deposition_date	2000-01-05
title	Catabolic ornithine carbamoyltransferase from Pseudomonas aeruginosa
keywords	TRANSFERASE, TRANSCARBAMYLASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.20 Å
rg_electron	20.10 Å
i0	25740600.00
molecular_weight	38196.0 kDa
excluded_volume	47526 Å³
envelope_volume	55234 Å³
shell_volume	22565 Å³
envelope_diameter	66.7 Å
shell_rg	27.07 Å
envelope_rg	20.36 Å
shape_rg	20.09 Å
total_rg	21.00 Å
total_atoms	2680
n_residues	335
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	65.1 Å
rg_real	21.07 Å
rg_real_error	0.31 Å
i0_real	2.5740e+07
i0_real_error	3.0360e+05
rg_reciprocal	21.10 Å
i0_reciprocal	25740000.0000
total_estimate	0.9060
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	25.9 Å
skewness	0.164
kurtosis	-0.501
angular_range	— – 0.3750 Å⁻¹
current_alpha	0.0000
highest_alpha	5452000.0000
n_real_points	69
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.933; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.982

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	ORNITHINE CARBAMOYLTRANSFERASE
formula_weight	38030.3 kDa
ec_number	2.1.3.3
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2784

AFNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKFAGVPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLADI

Source

organism	PSEUDOMONAS AERUGINOSA
ncbi_taxonomy_id	287
host_organism	PSEUDOMONAS AERUGINOSA

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	3

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	104

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6. Citations (4)

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length_a	134.320 Å
length_b	134.320 Å
length_c	134.320 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	24

space_group	I 2 3
int_tables_number	197
crystal_system	—

resolution	2.500 Å
resolution_low	10.000 Å
r_factor	0.1790
r_work	0.1790
r_free	0.2670

fit	/app/data/saxs_computation/dx/1dxh/1dxh.fit
pddf	/app/data/pr_computation/dx/1dxh/1dxh.pr.out
profile	/app/data/saxs_computation/dx/1dxh/1dxh.dat

Catabolic ornithine carbamoyltransferase from Pseudomonas aeruginosa

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction