1dy6
Structure of the imipenem-hydrolyzing beta-lactamase SME-1
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dy6 |
| deposition_date | 2000-01-27 |
| title | Structure of the imipenem-hydrolyzing beta-lactamase SME-1 |
| keywords | HYDROLASE, LACTAMASE, ANTIBIOTIC, CARBAPENEM, IMIPENEM; HYDROLASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 36.60 Å |
| rg_electron | 36.95 Å |
| i0 | 54771100.00 |
| molecular_weight | 58496.0 kDa |
| excluded_volume | 72878 ų |
| envelope_volume | 92666 ų |
| shell_volume | 21802 ų |
| envelope_diameter | 126.6 Å |
| shell_rg | 40.14 Å |
| envelope_rg | 36.39 Å |
| shape_rg | 36.94 Å |
| total_rg | 37.19 Å |
| total_atoms | 4116 |
| n_residues | 534 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 126.8 Å |
| rg_real | 37.14 Å |
| rg_real_error | 1.60 Å |
| i0_real | 5.4770e+07 |
| i0_real_error | 9.6540e+05 |
| rg_reciprocal | 36.81 Å |
| i0_reciprocal | 54750000.0000 |
| total_estimate | 0.6269 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 23.6 Å |
| skewness | 0.398 |
| kurtosis | -0.979 |
| angular_range | — – 0.2150 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 10020000.0000 |
| n_real_points | 44 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.068; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.040; Smooth: 0.901 |