← Back to search

1e3b

CYCLOPHILIN 3 FROM C.ELEGANS COMPLEXED WITH AUP(ET)3

Method: X-RAY DIFFRACTION D_max: 47.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1e3b
deposition_date	2000-06-08
title	CYCLOPHILIN 3 FROM C.ELEGANS COMPLEXED WITH AUP(ET)3
keywords	ISOMERASE, AUPET3 ADDUCT CYCLOPHILIN ANTIARTHRITIC GOLD; ISOMERASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	15.57 Å
rg_electron	14.47 Å
i0	7003660.00
molecular_weight	18781.0 kDa
excluded_volume	23229 Å³
envelope_volume	24949 Å³
shell_volume	14268 Å³
envelope_diameter	46.9 Å
shell_rg	20.73 Å
envelope_rg	14.70 Å
shape_rg	14.44 Å
total_rg	15.66 Å
total_atoms	1304
n_residues	172
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	47.5 Å
rg_real	15.43 Å
rg_real_error	0.25 Å
i0_real	7.0040e+06
i0_real_error	8.4500e+04
rg_reciprocal	15.45 Å
i0_reciprocal	7004000.0000
total_estimate	0.8926
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	21.7 Å
skewness	-0.000
kurtosis	-0.467
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	1604000.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.882; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.976

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	CYCLOPHILIN 3
formula_weight	18576.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	1521

MSRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQLKA

Source

organism	CAENORHABDITIS ELEGANS
ncbi_taxonomy_id	6239
host_organism	ESCHERICHIA COLI

Entity 2 non-polymer

description	GOLD ION
formula_weight	197.0 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	TRIETHYLPHOSPHANE
formula_weight	118.2 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	217

▶

6. Citations (1)

▶

length_a	61.157 Å
length_b	61.157 Å
length_c	123.077 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 41 21 2
int_tables_number	92
crystal_system	—

resolution	1.850 Å
resolution_low	31.000 Å
r_factor	0.1848
r_work	—
r_free	0.2468

fit	/app/data/saxs_computation/e3/1e3b/1e3b.fit
pddf	/app/data/pr_computation/e3/1e3b/1e3b.pr.out
profile	/app/data/saxs_computation/e3/1e3b/1e3b.dat

CYCLOPHILIN 3 FROM C.ELEGANS COMPLEXED WITH AUP(ET)3

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction