← Back to search

1e3l

P47H mutant of mouse class II alcohol dehydrogenase complex with NADH

Method: X-RAY DIFFRACTION D_max: 101.2 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1e3l
deposition_date	2000-06-19
title	P47H mutant of mouse class II alcohol dehydrogenase complex with NADH
keywords	ALCOHOL DEHYDROGENASE; ALCOHOL DEHYDROGENASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	30.20 Å
rg_electron	30.09 Å
i0	105512000.00
molecular_weight	81487.0 kDa
excluded_volume	102040 Å³
envelope_volume	120000 Å³
shell_volume	34166 Å³
envelope_diameter	109.5 Å
shell_rg	36.20 Å
envelope_rg	30.17 Å
shape_rg	30.10 Å
total_rg	30.56 Å
total_atoms	5678
n_residues	749
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	101.2 Å
rg_real	30.37 Å
rg_real_error	0.76 Å
i0_real	1.0550e+08
i0_real_error	1.6560e+06
rg_reciprocal	30.30 Å
i0_reciprocal	105500000.0000
total_estimate	0.8591
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	29.2 Å
skewness	0.485
kurtosis	-0.367
angular_range	— – 0.2600 Å⁻¹
current_alpha	0.0000
highest_alpha	60040000.0000
n_real_points	53
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.807; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.865; Smooth: 0.879

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (4)

Entity 1 polymer

description	ALCOHOL DEHYDROGENASE, CLASS II
formula_weight	40135.4 kDa
ec_number	1.1.1.1
mutation	YES
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	5855

GTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDINATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF

Source

organism	MUS MUSCULUS
common_name	HOUSE MOUSE
ncbi_taxonomy_id	10090
host_organism	ESCHERICHIA COLI

Entity 2 non-polymer

description	NICOTINAMIDE-ADENINE-DINUCLEOTIDE
formula_weight	663.4 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	4

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	177

▶

6. Citations (1)

▶

length_a	79.156 Å
length_b	80.639 Å
length_c	102.757 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.500 Å
resolution_low	25.000 Å
r_factor	0.1973
r_work	0.1973
r_free	0.2598

fit	/app/data/saxs_computation/e3/1e3l/1e3l.fit
pddf	/app/data/pr_computation/e3/1e3l/1e3l.pr.out
profile	/app/data/saxs_computation/e3/1e3l/1e3l.dat

P47H mutant of mouse class II alcohol dehydrogenase complex with NADH

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction