Proline 3-hydroxylase (type II) -apo form

Method: X-RAY DIFFRACTION D_max: 97.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1e5r
deposition_date	2000-07-28
title	Proline 3-hydroxylase (type II) -apo form
keywords	OXIDOREDUCTASE, OXYGENASE, 2-OXOGLUTARATE DEPENDENT OXYGENASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.66 Å
rg_electron	28.23 Å
i0	55916200.00
molecular_weight	59528.0 kDa
excluded_volume	74847 Å³
envelope_volume	93615 Å³
shell_volume	28385 Å³
envelope_diameter	96.9 Å
shell_rg	34.59 Å
envelope_rg	28.01 Å
shape_rg	28.22 Å
total_rg	28.91 Å
total_atoms	4216
n_residues	522
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	97.0 Å
rg_real	28.72 Å
rg_real_error	0.91 Å
i0_real	5.5920e+07
i0_real_error	8.7270e+05
rg_reciprocal	28.70 Å
i0_reciprocal	55920000.0000
total_estimate	0.8755
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.2 Å
skewness	0.381
kurtosis	-0.378
angular_range	— – 0.2750 Å⁻¹
current_alpha	0.0000
highest_alpha	14180000.0000
n_real_points	56
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.853; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.881; Smooth: 0.937

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	72.540 Å
length_b	72.540 Å
length_c	223.920 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 31 2 1
int_tables_number	152
crystal_system	—

resolution	2.300 Å
resolution_low	28.530 Å
r_factor	0.2250
r_work	0.2250
r_free	0.2750

description	PROLINE OXIDASE
formula_weight	33618.8 kDa
src_method	nat
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	4474

Proline 3-hydroxylase (type II) -apo form

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	258

fit	/app/data/saxs_computation/e5/1e5r/1e5r.fit
pddf	/app/data/pr_computation/e5/1e5r/1e5r.pr.out
profile	/app/data/saxs_computation/e5/1e5r/1e5r.dat