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1e5s

Proline 3-hydroxylase (type II) - Iron form

Method: X-RAY DIFFRACTION D_max: 93.7 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1e5s
deposition_date	2000-07-28
title	Proline 3-hydroxylase (type II) - Iron form
keywords	OXYGENASE, 2-OXOGLUTARATE DEPENDENT OXYGENASE; OXYGENASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.25 Å
rg_electron	27.87 Å
i0	53515500.00
molecular_weight	57759.0 kDa
excluded_volume	72496 Å³
envelope_volume	90974 Å³
shell_volume	27985 Å³
envelope_diameter	96.6 Å
shell_rg	34.10 Å
envelope_rg	27.68 Å
shape_rg	27.86 Å
total_rg	28.54 Å
total_atoms	4082
n_residues	503
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	93.7 Å
rg_real	28.33 Å
rg_real_error	0.90 Å
i0_real	5.3520e+07
i0_real_error	8.7310e+05
rg_reciprocal	28.31 Å
i0_reciprocal	53510000.0000
total_estimate	0.8135
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.4 Å
skewness	0.372
kurtosis	-0.370
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	13640000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.881; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.929; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	PROLINE OXIDASE
formula_weight	33618.8 kDa
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	4298

MRSHILGKIELDQTRLAPDLAYLAAVPTVEEEYDEFSNGFWKHVPLWNASGDSEDRLYRDLKDAAAQPTAHVEHVPYLKEIVTTVFDGTHLQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLCVDFAFDGPFDEKEIFADATLYAPGSTPDLPERRPFTAEHRRRILSLGQVIERENFRDILFLLSKVHYKYDVHPSETYDWLIEISKQAGDEKMVVKAEQIRDFAVEARALSERFSLTSW

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	1

Entity 3 non-polymer

description	FE (II) ION
formula_weight	55.8 kDa
src_method	syn
entity_count	2

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	216

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6. Citations (1)

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length_a	72.780 Å
length_b	72.780 Å
length_c	224.900 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 31 2 1
int_tables_number	152
crystal_system	—

resolution	2.400 Å
resolution_low	23.820 Å
r_factor	0.2160
r_work	0.2160
r_free	0.2710

fit	/app/data/saxs_computation/e5/1e5s/1e5s.fit
pddf	/app/data/pr_computation/e5/1e5s/1e5s.pr.out
profile	/app/data/saxs_computation/e5/1e5s/1e5s.dat

Proline 3-hydroxylase (type II) - Iron form

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction