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1efv

THREE-DIMENSIONAL STRUCTURE OF HUMAN ELECTRON TRANSFER FLAVOPROTEIN TO 2.1 A RESOLUTION

Method: X-RAY DIFFRACTION D_max: 75.6 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1efv
deposition_date	1996-10-16
title	THREE-DIMENSIONAL STRUCTURE OF HUMAN ELECTRON TRANSFER FLAVOPROTEIN TO 2.1 A RESOLUTION
keywords	ELECTRON TRANSPORT, FLAVOPROTEIN, GLUTARIC ACIDEMIA TYPE II; ELECTRON TRANSPORT
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	24.61 Å
rg_electron	23.77 Å
i0	60230700.00
molecular_weight	61338.0 kDa
excluded_volume	77380 Å³
envelope_volume	91171 Å³
shell_volume	31253 Å³
envelope_diameter	76.5 Å
shell_rg	31.65 Å
envelope_rg	23.80 Å
shape_rg	23.76 Å
total_rg	24.69 Å
total_atoms	4300
n_residues	564
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	75.6 Å
rg_real	24.45 Å
rg_real_error	0.32 Å
i0_real	6.0230e+07
i0_real_error	6.9980e+05
rg_reciprocal	24.48 Å
i0_reciprocal	60230000.0000
total_estimate	0.7058
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	30.0 Å
skewness	0.159
kurtosis	-0.507
angular_range	— – 0.3250 Å⁻¹
current_alpha	0.0000
highest_alpha	28340000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.932; Stabil: 1.000; Sysdev: 0.137; Positv: 1.000; Valcen: 0.994; Smooth: 0.971

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	ELECTRON TRANSFER FLAVOPROTEIN
formula_weight	33134.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	4558

MQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKKK

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 2 polymer

description	ELECTRON TRANSFER FLAVOPROTEIN
formula_weight	27885.6 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

MAELRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

Entity 3 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	ADENOSINE MONOPHOSPHATE
formula_weight	347.2 kDa
src_method	syn
entity_count	1

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	258

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6. Citations (1)

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length_a	47.437 Å
length_b	103.872 Å
length_c	63.696 Å
angle_alpha	90.00 °
angle_beta	109.98 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.100 Å
resolution_low	8.000 Å
r_factor	0.1720
r_work	0.1720
r_free	0.2220

fit	/app/data/saxs_computation/ef/1efv/1efv.fit
pddf	/app/data/pr_computation/ef/1efv/1efv.pr.out
profile	/app/data/saxs_computation/ef/1efv/1efv.dat

THREE-DIMENSIONAL STRUCTURE OF HUMAN ELECTRON TRANSFER FLAVOPROTEIN TO 2.1 A RESOLUTION

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)