CRYSTAL STRUCTURE OF A D-AMINOPEPTIDASE FROM OCHROBACTRUM ANTHROPI

Method: X-RAY DIFFRACTION D_max: 76.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1ei5
deposition_date	2000-02-24
title	CRYSTAL STRUCTURE OF A D-AMINOPEPTIDASE FROM OCHROBACTRUM ANTHROPI
keywords	D-AMINOPEPTIDASE, PENICILLIN BINDING PROTEIN, ALPHA/BETA DOMAIN, BETA BARREL DOMAIN, HYDROLASE; HYDROLASE
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	24.17 Å
rg_electron	23.01 Å
i0	54620600.00
molecular_weight	56281.0 kDa
excluded_volume	69839 Å³
envelope_volume	83370 Å³
shell_volume	29438 Å³
envelope_diameter	80.7 Å
shell_rg	30.80 Å
envelope_rg	22.98 Å
shape_rg	23.02 Å
total_rg	23.85 Å
total_atoms	3961
n_residues	518
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	76.1 Å
rg_real	24.00 Å
rg_real_error	0.51 Å
i0_real	5.4620e+07
i0_real_error	7.3010e+05
rg_reciprocal	24.04 Å
i0_reciprocal	54620000.0000
total_estimate	0.8971
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	32.1 Å
skewness	0.150
kurtosis	-0.438
angular_range	— – 0.3300 Å⁻¹
current_alpha	0.0000
highest_alpha	20230000.0000
n_real_points	65
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.890; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.995

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (2)

▶

6. Citations (1)

▶

length_a	82.860 Å
length_b	82.860 Å
length_c	204.650 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 41 21 2
int_tables_number	92
crystal_system	—

resolution	1.900 Å
resolution_low	12.500 Å
r_factor	—
r_work	0.1630
r_free	0.1920

description	D-AMINOPEPTIDASE
formula_weight	57458.8 kDa
ec_number	3.4.11.19
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	4329

CRYSTAL STRUCTURE OF A D-AMINOPEPTIDASE FROM OCHROBACTRUM ANTHROPI

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Ochrobactrum anthropi
ncbi_taxonomy_id	529
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	368

fit	/app/data/saxs_computation/ei/1ei5/1ei5.fit
pddf	/app/data/pr_computation/ei/1ei5/1ei5.pr.out
profile	/app/data/saxs_computation/ei/1ei5/1ei5.dat