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1ekm

;CRYSTAL STRUCTURE AT 2.5 A RESOLUTION OF ZINC-SUBSTITUTED COPPER AMINE OXIDASE OF HANSENULA POLYMORPHA EXPRESSED IN ESCHERICHIA COLI ;

Method: X-RAY DIFFRACTION D_max: 145.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ekm
deposition_date	2000-03-09
title	;CRYSTAL STRUCTURE AT 2.5 A RESOLUTION OF ZINC-SUBSTITUTED COPPER AMINE OXIDASE OF HANSENULA POLYMORPHA EXPRESSED IN ESCHERICHIA COLI ;
keywords	amine oxidase, quinoprotein, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	42.91 Å
rg_electron	42.72 Å
i0	721986000.00
molecular_weight	221080.0 kDa
excluded_volume	276040 Å³
envelope_volume	353880 Å³
shell_volume	67893 Å³
envelope_diameter	153.9 Å
shell_rg	48.36 Å
envelope_rg	43.04 Å
shape_rg	42.69 Å
total_rg	43.07 Å
total_atoms	15594
n_residues	1968
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	145.4 Å
rg_real	43.00 Å
rg_real_error	1.26 Å
i0_real	7.2200e+08
i0_real_error	1.3410e+07
rg_reciprocal	42.91 Å
i0_reciprocal	721900000.0000
total_estimate	0.8730
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	43.2 Å
skewness	0.397
kurtosis	-0.439
angular_range	— – 0.1850 Å⁻¹
current_alpha	0.0000
highest_alpha	127700000.0000
n_real_points	38
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.828; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.985; Smooth: 0.874

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	COPPER AMINE OXIDASE
formula_weight	73731.1 kDa
ec_number	1.4.3.6
src_method	man
entity_count	3

Polymer

type	polypeptide(L)
strand_id	A,B,C
atom_count	17070

APARPAHPLDPLSTAEIKAATNTVKSYFAGKKISFNTVTLREPARKAYIQWKEQGGPLPPRLAYYVILEAGKPGVKEGLVDLASLSVIETRALETVQPILTVEDLCSTEEVIRNDPAVIEQCVLSGIPANEMHKVYCDPWTIGYDERWGTGKRLQQALVYYRSDEDDSQYSHPLDFCPIVDTEEKKVIFIDIPNRRRKVSKHKHANFYPKHMIEKVGAMRPEAPPINVTQPEGVSFKMTGNVMEWSNFKFHIGFNYREGIVLSDVSYNDHGNVRPIFHRISLSEMIVPYGSPEFPHQRKHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDAHFSDRAGDPITVKNAVCIHEEDDGLLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNTYILGDDEEAGPWGTRVYPNVNAHNHQHLFSLRIDPRIDGDGNSAAACDAKSSPYPLGSPENMYGNAFYSEKTTFKTVKDSLTNYESATGRSWDIFNPNKVNPYSGKPPSYKLVSTQCPPLLAKEGSLVAKRAPWASHSVNVVPYKDNRLYPSGDHVPQWSGDGVRGMREWIGDGSENIDNTDILFFHTFGITHFPAPEDFPLMPAEPITLMLRPRHFFTENPGLDIQPSYAMTTSEAKRAV

Source

organism	Pichia angusta
ncbi_taxonomy_id	4905
host_organism	Escherichia coli

Entity 2 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	3

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	1476

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6. Citations (2)

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length_a	139.227 Å
length_b	153.515 Å
length_c	223.407 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	24

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	2.500 Å
resolution_low	500.000 Å
r_factor	0.1830
r_work	0.1830
r_free	0.2080

fit	/app/data/saxs_computation/ek/1ekm/1ekm.fit
pddf	/app/data/pr_computation/ek/1ekm/1ekm.pr.out
profile	/app/data/saxs_computation/ek/1ekm/1ekm.dat

;CRYSTAL STRUCTURE AT 2.5 A RESOLUTION OF ZINC-SUBSTITUTED COPPER AMINE OXIDASE OF HANSENULA POLYMORPHA EXPRESSED IN ESCHERICHIA COLI ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction