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1el7

COMPLEX OF MONOMERIC SARCOSINE OXIDASE WITH THE INHIBITOR [METHYTELLURO]ACETATE

Method: X-RAY DIFFRACTION D_max: 106.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1el7
deposition_date	2000-03-13
title	COMPLEX OF MONOMERIC SARCOSINE OXIDASE WITH THE INHIBITOR [METHYTELLURO]ACETATE
keywords	flavoprotein, oxidase, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	30.43 Å
rg_electron	29.97 Å
i0	126797000.00
molecular_weight	87727.0 kDa
excluded_volume	108580 Å³
envelope_volume	125950 Å³
shell_volume	36079 Å³
envelope_diameter	111.5 Å
shell_rg	35.95 Å
envelope_rg	29.98 Å
shape_rg	29.95 Å
total_rg	30.52 Å
total_atoms	6153
n_residues	770
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	106.1 Å
rg_real	30.59 Å
rg_real_error	1.01 Å
i0_real	1.2680e+08
i0_real_error	2.1790e+06
rg_reciprocal	30.52 Å
i0_reciprocal	126800000.0000
total_estimate	0.8465
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	30.6 Å
skewness	0.511
kurtosis	-0.199
angular_range	— – 0.2600 Å⁻¹
current_alpha	0.0000
highest_alpha	68780000.0000
n_real_points	53
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.742; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.862; Smooth: 0.912

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4. Crystallography & Experiment

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5. Entities & Polymer Info (7)

Entity 1 polymer

description	SARCOSINE OXIDASE
formula_weight	43101.4 kDa
ec_number	1.5.3.1
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	7024

STHFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAWNSKLLSKLNLDIPLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPEDESNLRAFLEEYMPGANGELKRGAVCMYTKTLDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEHDISIFSINRPALKESLQKTTI

Source

organism	Bacillus sp.
ncbi_taxonomy_id	69000
host_organism	Escherichia coli

Entity 2 non-polymer

description	PHOSPHATE ION
formula_weight	95.0 kDa
src_method	syn
entity_count	3

Entity 3 non-polymer

description	CHLORIDE ION
formula_weight	35.5 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	FLAVIN-ADENINE DINUCLEOTIDE
formula_weight	785.5 kDa
src_method	syn
entity_count	2

Entity 5 non-polymer

description	[METHYLTELLURO]ACETATE
formula_weight	200.7 kDa
src_method	syn
entity_count	2

Entity 6 non-polymer

description	TELLURIUM
formula_weight	127.6 kDa
src_method	syn
entity_count	2

Entity 7 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	799

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6. Citations (2)

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length_a	72.722 Å
length_b	69.504 Å
length_c	73.465 Å
angle_alpha	90.00 °
angle_beta	94.12 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	1.900 Å
resolution_low	500.000 Å
r_factor	0.1750
r_work	0.1750
r_free	0.2130

fit	/app/data/saxs_computation/el/1el7/1el7.fit
pddf	/app/data/pr_computation/el/1el7/1el7.pr.out
profile	/app/data/saxs_computation/el/1el7/1el7.dat