FREE ASPARTYL-TRNA SYNTHETASE (ASPRS) (E.C. 6.1.1.12) FROM YEAST

Method: X-RAY DIFFRACTION D_max: 93.8 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1eov
deposition_date	2000-03-24
title	FREE ASPARTYL-TRNA SYNTHETASE (ASPRS) (E.C. 6.1.1.12) FROM YEAST
keywords	aminoacyl tRNA synthetase, tRNA ligase, apo-enzyme, OB-fold, LIGASE; LIGASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.50 Å
rg_electron	27.84 Å
i0	49618700.00
molecular_weight	55580.0 kDa
excluded_volume	69974 Å³
envelope_volume	91119 Å³
shell_volume	28418 Å³
envelope_diameter	99.5 Å
shell_rg	34.05 Å
envelope_rg	27.87 Å
shape_rg	27.81 Å
total_rg	28.60 Å
total_atoms	3921
n_residues	487
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	93.8 Å
rg_real	28.67 Å
rg_real_error	0.71 Å
i0_real	4.9620e+07
i0_real_error	7.5180e+05
rg_reciprocal	28.62 Å
i0_reciprocal	49620000.0000
total_estimate	0.7036
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	28.5 Å
skewness	0.444
kurtosis	-0.426
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	8869000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.859; Stabil: 1.000; Sysdev: 0.242; Positv: 1.000; Valcen: 0.902; Smooth: 0.937

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (5)

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length_a	90.230 Å
length_b	90.230 Å
length_c	184.900 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 41 21 2
int_tables_number	92
crystal_system	—

resolution	2.300 Å
resolution_low	20.000 Å
r_factor	0.2020
r_work	0.2020
r_free	0.2420

description	ASPARTYL-TRNA SYNTHETASE
formula_weight	55681.4 kDa
ec_number	6.1.1.12
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	4148

FREE ASPARTYL-TRNA SYNTHETASE (ASPRS) (E.C. 6.1.1.12) FROM YEAST

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (5)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Saccharomyces cerevisiae
common_name	;baker's yeast ;
ncbi_taxonomy_id	4932
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	227

fit	/app/data/saxs_computation/eo/1eov/1eov.fit
pddf	/app/data/pr_computation/eo/1eov/1eov.pr.out
profile	/app/data/saxs_computation/eo/1eov/1eov.dat