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1asy

CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP

Method: X-RAY DIFFRACTION D_max: 124.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1asy
deposition_date	1995-01-19
title	CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP
keywords	COMPLEX (AMINOACYL-TRNA SYNTHASE-TRNA), COMPLEX (AMINOACYL-TRNA SYNTHASE-TRNA) complex; COMPLEX (AMINOACYL-TRNA SYNTHASE/TRNA)
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	38.62 Å
rg_electron	36.42 Å
i0	570390000.00
molecular_weight	160520.0 kDa
excluded_volume	186230 Å³
envelope_volume	244580 Å³
shell_volume	56035 Å³
envelope_diameter	124.8 Å
shell_rg	42.70 Å
envelope_rg	36.39 Å
shape_rg	36.27 Å
total_rg	37.12 Å
total_atoms	11096
n_residues	1114
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	124.4 Å
rg_real	38.63 Å
rg_real_error	1.10 Å
i0_real	5.7040e+08
i0_real_error	9.7380e+06
rg_reciprocal	38.63 Å
i0_reciprocal	570400000.0000
total_estimate	0.8285
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	45.5 Å
skewness	0.330
kurtosis	-0.409
angular_range	— – 0.2050 Å⁻¹
current_alpha	0.0000
highest_alpha	41190000.0000
n_real_points	42
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.923; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	T-RNA (75-MER)
formula_weight	24181.4 kDa
ec_number	6.1.1.12
src_method	syn
entity_count	2

Polymer

type	polyribonucleotide
strand_id	R,S
atom_count	11096

UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA

Entity 2 polymer

description	ASPARTYL-tRNA SYNTHETASE
formula_weight	56026.8 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B

EDTAKDNYGKLPLIQSRDSDRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP

Source

organism

Saccharomyces cerevisiae

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6. Citations (4)

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length_a	210.250 Å
length_b	146.170 Å
length_c	86.130 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	2.900 Å
resolution_low	7.000 Å
r_factor	0.2250
r_work	0.2250
r_free	—

fit	/app/data/saxs_computation/as/1asy/1asy.fit
pddf	/app/data/pr_computation/as/1asy/1asy.pr.out
profile	/app/data/saxs_computation/as/1asy/1asy.dat

CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Source

6. Citations (4)

7. Files & Curves (10)

Files (7)

Curves (3)