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1euc

CRYSTAL STRUCTURE OF DEPHOSPHORYLATED PIG HEART, GTP-SPECIFIC SUCCINYL-COA SYNTHETASE

Method: X-RAY DIFFRACTION D_max: 89.4 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1euc
deposition_date	2000-04-14
title	CRYSTAL STRUCTURE OF DEPHOSPHORYLATED PIG HEART, GTP-SPECIFIC SUCCINYL-COA SYNTHETASE
keywords	ligase, GTP-specific; LIGASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.13 Å
rg_electron	27.45 Å
i0	90985200.00
molecular_weight	74995.0 kDa
excluded_volume	94021 Å³
envelope_volume	112590 Å³
shell_volume	34297 Å³
envelope_diameter	96.8 Å
shell_rg	34.64 Å
envelope_rg	27.33 Å
shape_rg	27.47 Å
total_rg	28.11 Å
total_atoms	5254
n_residues	699
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	89.4 Å
rg_real	28.07 Å
rg_real_error	0.55 Å
i0_real	9.0990e+07
i0_real_error	1.3130e+06
rg_reciprocal	28.09 Å
i0_reciprocal	90990000.0000
total_estimate	0.7297
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	87.8 Å
skewness	0.272
kurtosis	-0.467
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	19950000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.929; Stabil: 1.000; Sysdev: 0.242; Positv: 1.000; Valcen: 0.999; Smooth: 0.970

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	SUCCINYL-COA SYNTHETASE, ALPHA CHAIN
formula_weight	32803.8 kDa
ec_number	6.2.1.4
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	5459

MAIRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKML

Source

organism	Sus scrofa
common_name	pig
ncbi_taxonomy_id	9823
host_organism	Escherichia coli

Entity 2 polymer

description	SUCCINYL-COA SYNTHETASE, BETA CHAIN
formula_weight	42811.0 kDa
ec_number	6.2.1.4
mutation	L23V
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

MVNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASVTKK

Source

organism	Sus scrofa
common_name	pig
ncbi_taxonomy_id	9823
host_organism	Escherichia coli

Entity 3 non-polymer

description	PHOSPHATE ION
formula_weight	95.0 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	2

Entity 5 non-polymer

description	ZINC ION
formula_weight	65.4 kDa
src_method	syn
entity_count	1

Entity 6 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	204

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6. Citations (1)

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length_a	86.798 Å
length_b	81.973 Å
length_c	49.891 Å
angle_alpha	90.00 °
angle_beta	104.53 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.100 Å
resolution_low	59.000 Å
r_factor	0.1720
r_work	0.1580
r_free	0.2200

fit	/app/data/saxs_computation/eu/1euc/1euc.fit
pddf	/app/data/pr_computation/eu/1euc/1euc.pr.out
profile	/app/data/saxs_computation/eu/1euc/1euc.dat

CRYSTAL STRUCTURE OF DEPHOSPHORYLATED PIG HEART, GTP-SPECIFIC SUCCINYL-COA SYNTHETASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (6)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)