SAXSdb — 1ev1

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1. Structure Basics

entry_id	1ev1
deposition_date	1997-12-02
title	ECHOVIRUS 1
keywords	VIRAL COAT PROTEIN, CAPSID, PICORNAVIRUS, ECHOVIRUS, Icosahedral virus, Virus; VIRUS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.52 Å
rg_electron	28.56 Å
i0	143409000.00
molecular_weight	93347.0 kDa
excluded_volume	115970 Å³
envelope_volume	141140 Å³
shell_volume	40158 Å³
envelope_diameter	101.1 Å
shell_rg	36.67 Å
envelope_rg	29.29 Å
shape_rg	28.55 Å
total_rg	29.29 Å
total_atoms	6561
n_residues	835
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	95.1 Å
rg_real	29.47 Å
rg_real_error	0.64 Å
i0_real	1.4340e+08
i0_real_error	2.2220e+06
rg_reciprocal	29.49 Å
i0_reciprocal	143400000.0000
total_estimate	0.8903
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	35.2 Å
skewness	0.337
kurtosis	-0.263
angular_range	— – 0.2700 Å⁻¹
current_alpha	0.0000
highest_alpha	25630000.0000
n_real_points	55
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.884; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.918

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4. Crystallography & Experiment

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5. Entities & Polymer Info (7)

Entity 1 polymer

description	ECHOVIRUS 1
formula_weight	31604.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	1
atom_count	6575

GDVQNAVEGAMVRVADTVQTSATNSERVPNLTAVETGHTSQAVPGDTMQTRHVINNHVRSESTIENFLARSACVFYLEYKTGTKEDSNSFNNWVITTRRVAQLRRKLEMFTYLRFDMEITVVITSSQDQSTSQNQNAPVLTHQIMYVPPGGPIPVSVDDYSWQTSTNPSIFWTEGNAPARMSIPFISIGNAYSNFYDGWSHFSQAGVYGFTTLNNMGQLFFRHVNKPNPAAITSVARIYFKPKHVRAWVPRPPRLCPYINSTNVNFEPKPVTEVRTNIITT

Entity 2 polymer

description	ECHOVIRUS 1
formula_weight	28126.5 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	2

GYSDRVRSITLGNSTITTQECANVVVGYGEWPEYLSDNEATAEDQPTQPDVATCRFYTLDSVQWENGSPGWWWKFPDALRDMGLFGQNMYYHYLGRAGYTIHVQCNASKFHQGCILVVCVPEAEMGSAQTSGVVNYEHISKGEIASRFTTTTTAEDHGVQAAVWNAGMGVGVGNLTIFPHQWINLRTNNSATIVMPYVNSVPMDNMYRHHNFTLMIIPFVPLDFSAGASTYVPITVTVAPMCAEYNGLRLAGHQ

Entity 3 polymer

description	ECHOVIRUS 1
formula_weight	26471.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	3

GLPTMNTPGSNQFLTSDDFQSPSAMPQFDVTPEMHIPGEVRNLMEIAEVDSVMPINNDSAAKVSSMEAYRVELSTNTNAGTQVFGFQLNPGAESVMNRTLMGEILNYYAHWSGSIKITFVFCGSAMTTGKFLLSYAPPGAGAPKTRKDAMLGTHVVWDVGLQSSCVLCIPWISQTHYRFVEKDPYTNAGFVTCWYQTSVVSPASNQPKCYMMCMVSACNDFSVRMLRDTKFIEQTSFYQ

Entity 4 polymer

description	ECHOVIRUS 1
formula_weight	7398.1 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	4

GAQVSTQKTGAHETSLSATGNSIIHYTNINYYKDAASNSANRQDFTQDPGKFTEPMKDVMIKTLPALN

Entity 5 non-polymer

description	PALMITIC ACID
formula_weight	256.4 kDa
src_method	syn
entity_count	1

Entity 6 non-polymer

description	MYRISTIC ACID
formula_weight	228.4 kDa
src_method	syn
entity_count	1

Entity 7 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	14

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6. Citations (2)

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length_a	472.150 Å
length_b	483.200 Å
length_c	352.450 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	3.550 Å
resolution_low	50.000 Å
r_factor	0.2630
r_work	0.2630
r_free	—

fit	/app/data/saxs_computation/ev/1ev1/1ev1.fit
pddf	/app/data/pr_computation/ev/1ev1/1ev1.pr.out
profile	/app/data/saxs_computation/ev/1ev1/1ev1.dat

ECHOVIRUS 1

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (7)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 non-polymer

Entity 6 non-polymer

Entity 7 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)