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1f07

STRUCTURE OF COENZYME F420 DEPENDENT TETRAHYDROMETHANOPTERIN REDUCTASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Method: X-RAY DIFFRACTION D_max: 115.6 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1f07
deposition_date	2000-05-15
title	STRUCTURE OF COENZYME F420 DEPENDENT TETRAHYDROMETHANOPTERIN REDUCTASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM
keywords	(beta, alpha)8 barrel, TIM barrel, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	36.72 Å
rg_electron	36.08 Å
i0	260701000.00
molecular_weight	135270.0 kDa
excluded_volume	171240 Å³
envelope_volume	213340 Å³
shell_volume	48745 Å³
envelope_diameter	117.9 Å
shell_rg	42.85 Å
envelope_rg	35.49 Å
shape_rg	36.08 Å
total_rg	36.51 Å
total_atoms	10902
n_residues	1284
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	115.6 Å
rg_real	36.61 Å
rg_real_error	0.86 Å
i0_real	2.6070e+08
i0_real_error	4.3230e+06
rg_reciprocal	36.68 Å
i0_reciprocal	260700000.0000
total_estimate	0.9056
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	37.6 Å
skewness	0.147
kurtosis	-0.717
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	68010000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.943; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.947

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	COENZYME F420-DEPENDENT N5,N10-METHYLENETETRAHYDROMETHANOPTERIN REDUCTASE
formula_weight	33518.3 kDa
src_method	nat
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	11407

MKFGIEFVPNEPIEKIVKLVKLAEDVGFEYAWITDHYNNKNVYETLALIAEGTETIKLGPGVTNPYVRSPAITASAIATLDELSNGRATLGIGPGDKATFDALGIEWVKPVSTIRDAIAMMRTLLAGEKTESGAQLMGVKAVQEKIPIYMGAQGPMMLKTAGEISDGALINASNPKDFEAAVPLIKEGAEAAGKSIADIDVAAYTCCSIDEDAAAAANAAKIVVAFIAAGSPPPVFERHGLPADTGKKFGELLGKGDFGGAIGAVDDALMEAFSVVGTPDEFIPKIEALGEMGVTQYVAGSPIGPDKEKSIKLLGEVIASF

Entity 2 non-polymer

description	3[N-MORPHOLINO]PROPANE SULFONIC ACID
formula_weight	209.3 kDa
src_method	syn
entity_count	4

Entity 3 non-polymer

description	(4S)-2-METHYL-2,4-PENTANEDIOL
formula_weight	118.2 kDa
src_method	syn
entity_count	4

Entity 4 non-polymer

description	CHLORIDE ION
formula_weight	35.5 kDa
src_method	syn
entity_count	2

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	505

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6. Citations (1)

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length_a	162.800 Å
length_b	128.200 Å
length_c	109.200 Å
angle_alpha	90.00 °
angle_beta	131.40 °
angle_gamma	90.00 °
z_pdb	16

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	2.000 Å
resolution_low	30.000 Å
r_factor	0.2090
r_work	0.2080
r_free	0.2370

fit	/app/data/saxs_computation/f0/1f07/1f07.fit
pddf	/app/data/pr_computation/f0/1f07/1f07.pr.out
profile	/app/data/saxs_computation/f0/1f07/1f07.dat

STRUCTURE OF COENZYME F420 DEPENDENT TETRAHYDROMETHANOPTERIN REDUCTASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction