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1f13

RECOMBINANT HUMAN CELLULAR COAGULATION FACTOR XIII

Method: X-RAY DIFFRACTION D_max: 120.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1f13
deposition_date	1998-01-16
title	RECOMBINANT HUMAN CELLULAR COAGULATION FACTOR XIII
keywords	COAGULATION, TRANSGLUTAMINASE, TRANSFERASE, ACYLTRANSFERASE, BLOOD COAGULATION, COAGULATION FACTOR; COAGULATION FACTOR
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	36.85 Å
rg_electron	36.46 Å
i0	410052000.00
molecular_weight	163950.0 kDa
excluded_volume	204690 Å³
envelope_volume	259430 Å³
shell_volume	57794 Å³
envelope_diameter	122.5 Å
shell_rg	43.66 Å
envelope_rg	36.68 Å
shape_rg	36.43 Å
total_rg	36.97 Å
total_atoms	11556
n_residues	1441
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	120.6 Å
rg_real	36.77 Å
rg_real_error	0.84 Å
i0_real	4.1010e+08
i0_real_error	6.5060e+06
rg_reciprocal	36.82 Å
i0_reciprocal	410100000.0000
total_estimate	0.8910
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	44.9 Å
skewness	0.281
kurtosis	-0.429
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	125700000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.891; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.907

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	CELLULAR COAGULATION FACTOR XIII ZYMOGEN
formula_weight	83233.9 kDa
ec_number	2.3.2.13
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	12043

SETSRTAFGGRRAVPPNNSNAAEDDLPTVELQGVVPRGVNLQEFLNVTSVHLFKERWDTNKVDHHTDKYENNKLIVRRGQSFYVQIDFSRPYDPRRDLFRVEYVIGRYPQENKGTYIPVPIVSELQSGKWGAKIVMREDRSVRLSIQSSPKCIVGKFRMYVAVWTPYGVLRTSRNPETDTYILFNPWCEDDAVYLDNEKEREEYVLNDIGVIFYGEVNDIKTRSWSYGQFEDGILDTCLYVMDRAQMDLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSWDNIYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAWMTRPDLPVGFGGWQAVDSTPQENSDGMYRCGPASVQAIKHGHVCFQFDAPFVFAEVNSDLIYITAKKDGTHVVENVDATHIGKLIVTKQIGGDGMMDITDTYKFQEGQEEERLALETALMYGAKKPLNTEGVMKSRSNVDMDFEVENAVLGKDFKLSITFRNNSHNRYTITAYLSANITFYTGVPKAEFKKETFDVTLEPLSFKKEAVLIQAGEYMGQLLEQASLHFFVTARINETRDVLAKQKSTVLTIPEIIIKVRGTQVVGSDMTVTVEFTNPLKETLRNVWVHLDGPGVTRPMKKMFREIRPNSTVQWEEVCRPWVSGHRKLIASMSSDSLRHVYGELDVQIQRRPSM

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Saccharomyces cerevisiae

Entity 2 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	487

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6. Citations (4)

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length_a	134.590 Å
length_b	72.780 Å
length_c	101.050 Å
angle_alpha	90.00 °
angle_beta	106.08 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.100 Å
resolution_low	40.000 Å
r_factor	0.1830
r_work	0.1830
r_free	0.2360

fit	/app/data/saxs_computation/f1/1f13/1f13.fit
pddf	/app/data/pr_computation/f1/1f13/1f13.pr.out
profile	/app/data/saxs_computation/f1/1f13/1f13.dat

RECOMBINANT HUMAN CELLULAR COAGULATION FACTOR XIII

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (4)

7. Files & Curves (10)

Files (7)

Curves (3)