1ffk

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Method: X-RAY DIFFRACTION D_max: 214.7 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	1ffk
沉积日期 deposition_date	2000-07-25
结构标题 title	CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
关键词 keywords	ribosome assembly, RNA-RNA, protein-RNA, protein-protein, ribosome; RIBOSOME
实验方法 method	X-RAY DIFFRACTION

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	67.69 Å
回转半径 Rg (电子) rg_electron	68.59 Å
零角强度 I(0) i0	58289600000.00
分子量 molecular_weight	1323600.0 kDa
排除体积 excluded_volume	1344400 Å³
包络体积 envelope_volume	1982000 Å³
水化壳体积 shell_volume	226920 Å³
包络直径 envelope_diameter	224.0 Å
壳层 Rg shell_rg	79.06 Å
包络 Rg envelope_rg	66.65 Å
形状 Rg shape_rg	65.68 Å
总 Rg total_rg	71.95 Å
总原子数 total_atoms	60619
残基数 n_residues	2828
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	214.7 Å
Rg (实空间) rg_real	67.48 Å
Rg 误差 (实空间) rg_real_error	1.21 Å
I(0) (实空间) i0_real	5.8290e+10
I(0) 误差 (实空间) i0_real_error	1.1640e+09
Rg (倒空间) rg_reciprocal	68.31 Å
I(0) (倒空间) i0_reciprocal	58370000000.0000
解质量估计 total_estimate	0.8499
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	84.0 Å
偏度 Skewness skewness	0.206
峰度 Kurtosis kurtosis	-0.391
角度范围 angular_range	— – 0.1150 Å⁻¹
当前正则化参数 α current_alpha	0.0002
最高正则化参数 α highest_alpha	6406000000.0000
实空间数据点数 n_real_points	24
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.886; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.947; Smooth: 0.438

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (33)

Entity 1 polymer

描述 description	23S RRNA
分子量 formula_weight	946034.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	0
原子数 atom_count	64281

UUGGCUACUAUGCCAGCUGGUGGAUUGCUCGGCUCAGGCGCUGAUGAAGGACGUGCCAAGCUGCGAUAAGCCAUGGGGAGCCGCACGGAGGCGAAGAACCAUGGAUUUCCGAAUGAGAAUCUCUCUAACAAUUGCUUCGCGCAAUGAGGAACCCCGAGAACUGAAACAUCUCAGUAUCGGGAGGAACAGAAAACGCAAUGUGAUGUCGUUAGUAACCGCGAGUGAACGCGAUACAGCCCAAACCGAAGCCCUCACGGGCAAUGUGGUGUCAGGGCUACCUCUCAUCAGCCGACCGUCUCGACGAAGUCUCUUGGAACAGAGCGUGAUACAGGGUGACAACCCCGUACUCGAGACCAGUACGACGUGCGGUAGUGCCAGAGUAGCGGGGGUUGGAUAUCCCUCGCGAAUAACGCAGGCAUCGACUGCGAAGGCUAAACACAACCUGAGACCGAUAGUGAACAAGUAGUGUGAACGAACGCUGCAAAGUACCCUCAGAAGGGAGGCGAAAUAGAGCAUGAAAUCAGUUGGCGAUCGAGCGACAGGGCAUACAAGGUCCCUCGACGAAUGACCGACGCGCGAGCGUCCAGUAAGACUCACGGGAAGCCGAUGUUCUGUCGUACGUUUUGAAAAACGAGCCAGGGAGUGUGUCUGCAUGGCAAGUCUAACCGGAGUAUCCGGGGAGGCACAGGGAAACCGACAUGGCCGCAGGGCUUUGCCCGAGGGCCGCCGUCUUCAAGGGCGGGGAGCCAUGUGGACACGACCCGAAUCCGGACGAUCUACGCAUGGACAAGAUGAAGCGUGCCGAAAGGCACGUGGAAGUCUGUUAGAGUUGGUGUCCUACAAUACCCUCUCGUGAUCUAUGUGUAGGGGUGAAAGGCCCAUCGAGUCCGGCAACAGCUGGUUCCAAUCGAAACAUGUCGAAGCAUGACCUCCGCCGAGGUAGUCUGUGAGGUAGAGCGACCGAUUGGUGUGUCCGCCUCCGAGAGGAGUCGGCACACCUGUCAAACUCCAAACUUACAGACGCCGUUUGACGCGGGGAUUCCGGUGCGCGGGGUAAGCCUGUGUACCAGGAGGGGAACAACCCAGAGAUAGGUUAAGGUCCCCAAGUGUGGAUUAAGUGUAAUCCUCUGAAGGUGGUCUCGAGCCCUAGACAGCCGGGAGGUGAGCUUAGAAGCAGCUACCCUCUAAGAAAAGCGUAACAGCUUACCGGCCGAGGUUUGAGGCGCCCAAAAUGAUCGGGACUCAAAUCCACCACCGAGACCUGUCCGUACCACUCAUACUGGUAAUCGAGUAGAUUGGCGCUCUAAUUGGAUGGAAGUAGGGGUGAAAACUCCUAUGGACCGAUUAGUGACGAAAAUCCUGGCCAUAGUAGCAGCGAUAGUCGGGUGAGAACCCCGACGGCCUAAUGGAUAAGGGUUCCUCAGCACUGCUGAUCAGCUGAGGGUUAGCCGGUCCUAAGUCAUACCGCAACUCGACUAUGACGAAAUGGGAAACGGGUUAAUAUUCCCGUGCCACUAUGCAGUGAAAGUUGACGCCCUGGGGUCGAUCACGCUGGGCAUUCGCCCAGUCGAACCGUCCAACUCCGUGGAAGCCGUAAUGGCAGGAAGCGGACGAACGGCGGCAUAGGGAAACGUGAUUCAACCUGGGGCCCAUGAAAAGACGAGCAUAGUGUCCGUACCGAGAACCGACACAGGUGUCCAUGGCGGCGAAAGCCAAGGCCUGUCGGGAGCAACCAACGUUAGGGAAUUCGGCAAGUUAGUCCCGUACCUUCGGAAGAAGGGAUGCCUGCUCCGGAACGGAGCAGGUCGCAGUGACUCGGAAGCUCGGACUGUCUAGUAACAACAUAGGUGACCGCAAAUCCGCAAGGACUCGUACGGUCACUGAAUCCUGCCCAGUGCAGGUAUCUGAACACCUCGUACAAGAGGACGAAGGACCUGUCAACGGCGGGGGUAACUAUGACCCUCUUAAGGUAGCGUAGUACCUUGCCGCAUCAGUAGCGGCUUGCAUGAAUGGAUUAACCAGAGCUUCACUGUCCCAACGUUGGGCCCGGUGAACUGUACAUUCCAGUGCGGAGUCUGGAGACACCCAGGGGGAAGCGAAGACCCUAUGGAGCUUUACUGCAGGCUGUCGCUGAGACGUGGUCGCCGAUGUGCAGCAUAGGUAGGAGACACUACACAGGUACCCGCGCUAGCGGGCCACCGAGUCAACAGUGAAAUACUACCCGUCGGUGACUGCGACUCUCACUCCGGGAGGAGGACACCGAUAGCCGGGCAGUUUGACUGGGGCGGUACGCGCUCGAAAAGAUAUCGAGCGCGCCCUAUGGCUAUCUCAGCCGGGACAGAGACCCGGCGAAGAGUGCAAGAGCAAAAGAUAGCUUGACAGUGUUCUUCCCAACGAGGAACGCUGACGCGAAAGCGUGGUCUAGCGAACCAAUUAGCCUGCUUGAUGCGGGCAAUUGAUGACAGAAAAGCUACCCUAGGGAUAACAGAGUCGUCACUCGCAAGAGCACAUAUCGACCGAGUGGCUUGCUACCUCGAUGUCGGUUCCCUCCAUCCUGCCCGUGCAGAAGCGGGCAAGGGUGAGGUUGUUCGCCUAUUAAAGGAGGUCGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUCGGCUGCUAUCUACUGGGUGUGUAAUGGUGUCUGACAAGAACGACCGUAUAGUACGAGAGGAACUACGGUUGGUGGCCACUGGUGUACCGGUUGUUCGAGAGAGCACGUGCCGGGUAGCCACGCCACACGGGGUAAGAGCUGAACGCAUCUAAGCUCGAAACCCACUUGGAAAAGAGACACCGCCGAGGUCCCGCGUACAAGACGCGGUCGAUAGACUCGGGGUGUGCGCGUCGAGGUAACGAGACGUUAAGCCCACGAGCACUAACAGACCAAAGCCAUCAU

Entity 2 polymer

描述 description	5S RRNA
分子量 formula_weight	39318.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	9

UUAGGCGGCCACAGCGGUGGGGUUGCCUCCCGUACCCAUCCCGAACACGGAAGAUAAGCCCACCAGCGUUCCGGGGAGUACUGGAGUGCGCGAGCCUCUGGGAAACCCGGUUCGCCGCCACC

Entity 3 polymer

描述 description	RIBOSOMAL PROTEIN L2
分子量 formula_weight	25237.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	A

GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVDAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVGGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGGNE

Entity 4 polymer

描述 description	RIBOSOMAL PROTEIN L3
分子量 formula_weight	37223.2 kDa
突变 mutation	GLU67 DELETION, TYR312 INSERTION
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	B

PQPSRPRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQGFAGYKAGMTHVVLVNDEPNSPREGMETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVPFFRPAVRPNDQPRLDPEVRYVSNESNQG

Entity 5 polymer

描述 description	RIBOSOMAL PROTEIN L4
分子量 formula_weight	26443.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C

MEATIYDLDGNTDGEVDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAER

Entity 6 polymer

描述 description	RIBOSOMAL PROTEIN L5
分子量 formula_weight	19420.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

SSESESGGDFHEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEVSE

Entity 7 polymer

描述 description	RIBOSOMAL PROTEIN L7AE
分子量 formula_weight	12600.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

PVYVDFDVPADLEDDALEALEVARDTGAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAAAAVTDAGAAATVLEEIADKVEELR

Entity 8 polymer

描述 description	RIBOSOMAL PROTEIN L10E
分子量 formula_weight	17231.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	F

KPGAHFRNSIKPAYTRREYISGIPGKGIAQFKMGNNGAGPTYPAQVENVVEKPVQIRHNALEAARNAANRFVQNSGAAANYKFRIRKFPFHVIREQDGDGMRAPFGKSVGTAARSHGANHDFIAWVNPDPAVEFAWRRAYMKVTPTVNIDSSPAGNA

Entity 9 polymer

描述 description	RIBOSOMAL PROTEIN L13
分子量 formula_weight	16249.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	G

MSVAEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW

Entity 10 polymer

描述 description	RIBOSOMAL PROTEIN L14
分子量 formula_weight	14216.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	H

MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV

Entity 11 polymer

描述 description	RIBOSOMAL PROTEIN L15E
分子量 formula_weight	23372.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	I

MKSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKGRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSRTRGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKKRR

Entity 12 polymer

描述 description	RIBOSOMAL PROTEIN L15
分子量 formula_weight	17874.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	J

TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELTDLGEERQAEAEETEDADADEE

Entity 13 polymer

描述 description	RIBOSOMAL PROTEIN L18
分子量 formula_weight	20509.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	K

ATGPRYKVPMRRRREARTDYHQRLRLLKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQRTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDELRETLLDGDIEL

Entity 14 polymer

描述 description	RIBOSOMAL PROTEIN L18E
分子量 formula_weight	12307.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	L

SKTNPRLSSLIADLKSAARSSGGAVWGDVAERLEKPRRTHAEVNLGRIERYAQEDETVVVPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSLEQAIENNPEGSHVRVIR

Entity 15 polymer

描述 description	RIBOSOMAL PROTEIN L19
分子量 formula_weight	16631.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

TDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAKGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA

Entity 16 polymer

描述 description	RIBOSOMAL PROTEIN L21E
分子量 formula_weight	10436.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRRQE

Entity 17 polymer

描述 description	RIBOSOMAL PROTEIN L22
分子量 formula_weight	16835.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	O

GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVED

Entity 18 polymer

描述 description	RIBOSOMAL PROTEIN L23
分子量 formula_weight	9481.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	P

SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVASRIGVF

Entity 19 polymer

描述 description	RIBOSOMAL PROTEIN L24
分子量 formula_weight	13539.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Q

SKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA

Entity 20 polymer

描述 description	RIBOSOMAL PROTEIN L24E
分子量 formula_weight	7233.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	R

PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDEA

Entity 21 polymer

描述 description	RIBOSOMAL PROTEIN L29
分子量 formula_weight	7758.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	S

TVLHVQEIRDMTPAEREAELDDLKTELLNARAVQAAGGAPENPGRIKELRKAIARIKTIQGEEGDLQENE

Entity 22 polymer

描述 description	RIBOSOMAL PROTEIN L30
分子量 formula_weight	17062.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	T

MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR

Entity 23 polymer

描述 description	RIBOSOMAL PROTEIN L31E
分子量 formula_weight	10253.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	U

SASDFEERVVTIPLRDARAEPNHKRADKAMILIREHLAKHFSVDEDAVRLDPSINEAAWARGRANTPSKIRVRAARFEEEGEAIVEAETAE

Entity 24 polymer

描述 description	RIBOSOMAL PROTEIN L32E
分子量 formula_weight	16223.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	V

QARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGVDGDTEAVRINSKVGARKRERIEEEAEDAGIRVLNPTYVEVEVSE

Entity 25 polymer

描述 description	RIBOSOMAL PROTEIN L37AE
分子量 formula_weight	8085.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	W

PTGRFGPRYGLKIRVRVRDVEIKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGGAYTPETVAGKAVMKA

Entity 26 polymer

描述 description	RIBOSOMAL PROTEIN L37E
分子量 formula_weight	6199.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	X

TGAGTPSQGKKNTTTHTKCRRCGEKSYHTKKKVCSSCGFGKSAKRRDYEWQSKAGE

Entity 27 polymer

描述 description	RIBOSOMAL PROTEIN L39E
分子量 formula_weight	5994.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Y

GKKSKATKKRKAKLDNQNSRVPAYVMLKTDREVQRNHKRRHWRRNDTDE

Entity 28 polymer

描述 description	RIBOSOMAL PROTEIN L44E
分子量 formula_weight	10815.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Z

MQMPRRFNTYCPHCNEHQEHEVEKVRSGRQTGMKWIDRQRERNSGIGNDGKFSKVPGGDKPTKKTDLKYRCGECGKAHLREGWRAGRLEFQE

Entity 29 polymer

描述 description	RIBOSOMAL PROTEIN L6
分子量 formula_weight	19830.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	1

PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKPNRGDA

Entity 30 non-polymer

描述 description	POTASSIUM ION
分子量 formula_weight	39.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 31 non-polymer

描述 description	MAGNESIUM ION
分子量 formula_weight	24.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 32 non-polymer

描述 description	CADMIUM ION
分子量 formula_weight	112.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	4

Entity 33 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	6

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6. 折叠分类 (SCOP + CATH) 29 domains

SCOP 2.08 (29 domains)

结构域编号 domain_id	d1ffk11
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.141 — Ribosomal protein L6
超家族 Superfamily superfamily	d.141.1 — Ribosomal protein L6
家族 Family family	d.141.1.1 — Ribosomal protein L6

结构域编号 domain_id	d1ffk12
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.141 — Ribosomal protein L6
超家族 Superfamily superfamily	d.141.1 — Ribosomal protein L6
家族 Family family	d.141.1.1 — Ribosomal protein L6

结构域编号 domain_id	d1ffka1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.34 — SH3-like barrel
超家族 Superfamily superfamily	b.34.5 — Translation proteins SH3-like domain
家族 Family family	b.34.5.3 — C-terminal domain of ribosomal protein L2

结构域编号 domain_id	d1ffka2
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.40 — OB-fold
超家族 Superfamily superfamily	b.40.4 — Nucleic acid-binding proteins
家族 Family family	b.40.4.5 — Cold shock DNA-binding domain-like

结构域编号 domain_id	d1ffkb_
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.43 — Reductase/isomerase/elongation factor common domain
超家族 Superfamily superfamily	b.43.3 — Translation proteins
家族 Family family	b.43.3.2 — Ribosomal protein L3

结构域编号 domain_id	d1ffkc_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.22 — Ribosomal protein L4
超家族 Superfamily superfamily	c.22.1 — Ribosomal protein L4
家族 Family family	c.22.1.1 — Ribosomal protein L4

结构域编号 domain_id	d1ffkd_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.77 — RL5-like
超家族 Superfamily superfamily	d.77.1 — RL5-like
家族 Family family	d.77.1.1 — Ribosomal protein L5

结构域编号 domain_id	d1ffke_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.79 — Bacillus chorismate mutase-like
超家族 Superfamily superfamily	d.79.3 — L30e-like
家族 Family family	d.79.3.1 — L30e/L7ae ribosomal proteins

结构域编号 domain_id	d1ffkf_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.41 — alpha/beta-Hammerhead
超家族 Superfamily superfamily	d.41.4 — Ribosomal protein L16p/L10e
家族 Family family	d.41.4.1 — Ribosomal protein L10e

结构域编号 domain_id	d1ffkg_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.21 — Ribosomal protein L13
超家族 Superfamily superfamily	c.21.1 — Ribosomal protein L13
家族 Family family	c.21.1.1 — Ribosomal protein L13

结构域编号 domain_id	d1ffkh_
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.39 — Ribosomal protein L14
超家族 Superfamily superfamily	b.39.1 — Ribosomal protein L14
家族 Family family	b.39.1.1 — Ribosomal protein L14

结构域编号 domain_id	d1ffki_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.12 — Ribosomal proteins S24e, L23 and L15e
超家族 Superfamily superfamily	d.12.1 — Ribosomal proteins S24e, L23 and L15e
家族 Family family	d.12.1.2 — L15e

结构域编号 domain_id	d1ffkj_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.12 — Ribosomal proteins L15p and L18e
超家族 Superfamily superfamily	c.12.1 — Ribosomal proteins L15p and L18e
家族 Family family	c.12.1.1 — Ribosomal proteins L15p and L18e

结构域编号 domain_id	d1ffkk_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.55 — Ribonuclease H-like motif
超家族 Superfamily superfamily	c.55.4 — Translational machinery components
家族 Family family	c.55.4.1 — Ribosomal protein L18 and S11

结构域编号 domain_id	d1ffkl_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.12 — Ribosomal proteins L15p and L18e
超家族 Superfamily superfamily	c.12.1 — Ribosomal proteins L15p and L18e
家族 Family family	c.12.1.1 — Ribosomal proteins L15p and L18e

结构域编号 domain_id	d1ffkm_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.94 — Ribosomal protein L19 (L19e)
超家族 Superfamily superfamily	a.94.1 — Ribosomal protein L19 (L19e)
家族 Family family	a.94.1.1 — Ribosomal protein L19 (L19e)

结构域编号 domain_id	d1ffkn_
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.34 — SH3-like barrel
超家族 Superfamily superfamily	b.34.5 — Translation proteins SH3-like domain
家族 Family family	b.34.5.1 — Ribosomal proteins L24p and L21e

结构域编号 domain_id	d1ffko_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.55 — Ribosomal protein L22
超家族 Superfamily superfamily	d.55.1 — Ribosomal protein L22
家族 Family family	d.55.1.1 — Ribosomal protein L22

结构域编号 domain_id	d1ffkp_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.12 — Ribosomal proteins S24e, L23 and L15e
超家族 Superfamily superfamily	d.12.1 — Ribosomal proteins S24e, L23 and L15e
家族 Family family	d.12.1.1 — L23p

结构域编号 domain_id	d1ffkq_
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.34 — SH3-like barrel
超家族 Superfamily superfamily	b.34.5 — Translation proteins SH3-like domain
家族 Family family	b.34.5.1 — Ribosomal proteins L24p and L21e

结构域编号 domain_id	d1ffkr_
类 Class class	g — Small proteins
折叠类型 Fold fold	g.39 — Glucocorticoid receptor-like (DNA-binding domain)
超家族 Superfamily superfamily	g.39.1 — Glucocorticoid receptor-like (DNA-binding domain)
家族 Family family	g.39.1.6 — Ribosomal protein L24e

结构域编号 domain_id	d1ffks_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.2 — Long alpha-hairpin
超家族 Superfamily superfamily	a.2.2 — Ribosomal protein L29 (L29p)
家族 Family family	a.2.2.1 — Ribosomal protein L29 (L29p)

结构域编号 domain_id	d1ffkt_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.59 — Ribosomal protein L30p/L7e
超家族 Superfamily superfamily	d.59.1 — Ribosomal protein L30p/L7e
家族 Family family	d.59.1.1 — Ribosomal protein L30p/L7e

结构域编号 domain_id	d1ffku_
类 Class class	d — Alpha and beta proteins (a+b)
折叠类型 Fold fold	d.29 — Ribosomal protein L31e
超家族 Superfamily superfamily	d.29.1 — Ribosomal protein L31e
家族 Family family	d.29.1.1 — Ribosomal protein L31e

结构域编号 domain_id	d1ffkv_
类 Class class	c — Alpha and beta proteins (a/b)
折叠类型 Fold fold	c.9 — Barstar-like
超家族 Superfamily superfamily	c.9.2 — Ribosomal protein L32e
家族 Family family	c.9.2.1 — Ribosomal protein L32e

结构域编号 domain_id	d1ffkw_
类 Class class	g — Small proteins
折叠类型 Fold fold	g.41 — Rubredoxin-like
超家族 Superfamily superfamily	g.41.8 — Zn-binding ribosomal proteins
家族 Family family	g.41.8.1 — Ribosomal protein L37ae

结构域编号 domain_id	d1ffkx_
类 Class class	g — Small proteins
折叠类型 Fold fold	g.41 — Rubredoxin-like
超家族 Superfamily superfamily	g.41.8 — Zn-binding ribosomal proteins
家族 Family family	g.41.8.2 — Ribosomal protein L37e

结构域编号 domain_id	d1ffky_
类 Class class	a — All alpha proteins
折叠类型 Fold fold	a.137 — Non-globular all-alpha subunits of globular proteins
超家族 Superfamily superfamily	a.137.1 — Ribosomal protein L39e
家族 Family family	a.137.1.1 — Ribosomal protein L39e

结构域编号 domain_id	d1ffkz_
类 Class class	g — Small proteins
折叠类型 Fold fold	g.41 — Rubredoxin-like
超家族 Superfamily superfamily	g.41.8 — Zn-binding ribosomal proteins
家族 Family family	g.41.8.3 — Ribosomal protein L44e

▶

7. 引用文献 (4)

▶

晶胞边长 a length_a	211.660 Å
晶胞边长 b length_b	299.670 Å
晶胞边长 c length_c	573.770 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	8

空间群 space_group	C 2 2 21
空间群编号 int_tables_number	20
晶系 crystal_system	—

分辨率 resolution	2.400 Å
最低分辨率 resolution_low	90.000 Å
R 因子 r_factor	—
R_work r_work	0.2520
R_free r_free	0.2610

fit	/app/data/saxs_computation/ff/1ffk/1ffk.fit
pddf	/app/data/pr_computation/ff/1ffk/1ffk.pr.out
profile	/app/data/saxs_computation/ff/1ffk/1ffk.dat

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

5. 实体与聚合体信息 (33)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 polymer

聚合体 Polymer

Entity 12 polymer

聚合体 Polymer

Entity 13 polymer

聚合体 Polymer

Entity 14 polymer

聚合体 Polymer

Entity 15 polymer

聚合体 Polymer

Entity 16 polymer

聚合体 Polymer

Entity 17 polymer

聚合体 Polymer

Entity 18 polymer

聚合体 Polymer

Entity 19 polymer

聚合体 Polymer

Entity 20 polymer

聚合体 Polymer

Entity 21 polymer

聚合体 Polymer

Entity 22 polymer

聚合体 Polymer

Entity 23 polymer

聚合体 Polymer

Entity 24 polymer

聚合体 Polymer

Entity 25 polymer

聚合体 Polymer

Entity 26 polymer

聚合体 Polymer

Entity 27 polymer

聚合体 Polymer

Entity 28 polymer

聚合体 Polymer

Entity 29 polymer

聚合体 Polymer

Entity 30 non-polymer

Entity 31 non-polymer

Entity 32 non-polymer

Entity 33 water

6. 折叠分类 (SCOP + CATH) 29 domains

SCOP 2.08 (29 domains)

7. 引用文献 (4)

8. 文件与曲线 (10)

Files (7)

Curves (3)